Browse Element(s) Details


Os.9376.1.S1_at

Description gb:AK058630.1
DB_XREF= gi:32968648
TID=Os.9376.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C09, full insert sequence.
FL= gb:AK058630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0556210/1140S ribosomal protein S25, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9376.1.S1_at--666--1311NONE
AGAGGCTCAGGATCAATGGGTCGCT
NONE
Os.9376.1.S1_at--492--811Chr11:2523710..2523734 (25 bp)
ATGGGTCGCTCGCTCGACAGGCCAT
LOC_Os11g05562
Os.9376.1.S1_at--1157--5651Chr11:2523725..2523749 (25 bp)
GACAGGCCATCAAGGATCTTGAGTC
LOC_Os11g05562
Os.9376.1.S1_at--530--431Chr11:2523740..2523764 (25 bp)
ATCTTGAGTCAAGAGGCGCCATCAG
LOC_Os11g05562
Os.9376.1.S1_at--751--4551Chr11:2523755..2523779 (25 bp)
GCGCCATCAGGGTGGTGTCTGTACA
LOC_Os11g05562
Os.9376.1.S1_at--675--7451Chr11:2523769..2523793 (25 bp)
GTGTCTGTACATTCGAGCCAGCTAA
LOC_Os11g05562
Os.9376.1.S1_at--743--5851Chr11:2523803..2523827 (25 bp)
GAGCCACCAACGCTTGAGGCATAAG
LOC_Os11g05562
Os.9376.1.S1_at--772--391Chr11:2523857..2523881 (25 bp)
ATCAGTCTAGACTCGCAACCAAAAA
LOC_Os11g05562
Os.9376.1.S1_at--56--1231Chr11:2523936..2523960 (25 bp)
AGTTCTGATTCCCATGACAATTGCA
LOC_Os11g05562
Os.9376.1.S1_at--916--5591Chr11:2523965..2523989 (25 bp)
GAAATTGCTTATCTTCACTGAAATT
LOC_Os11g05562
Os.9376.1.S1_at--267--2252Chr11:2523985..2524009 (25 bp)
AAATTCAATGTTCAACAAGCTGGCT
LOC_Os11g05562
Target Sequence 
AGAGGCTCAGGATCAATGGGTCGCTCGCTCGACAGGCCATCAAGGATCTTGAGTCAAGAGGCGCCATCAGGGTGGTGTCT
GTACATTCGAGCCAGCTAATCTACANCAGAGCCACCAACGCTTGAGGCATAAGCTTTCACTAAAAAAAAANNGCTTGGGA
CATAATCAGTCTAGACTCGCAACCAAAAAAATCGTATTGTACGATCTTTGTTGATCTTGAGATCCTGAAGAAAAAAAATT
GGGAGTTCTGATTCCCATGACAATTGCAACATGAAATTGCTTATCTTCACTGAAATTCAATGTTCAACAAGCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis