Browse Element(s) Details


Os.9427.1.S1_at

Description gb:AK067458.1
DB_XREF= gi:32977476
TID=Os.9427.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBa0029P06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107H17, full insert sequence.
FL= gb:AK067458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0502011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04990OsAffx.30285.1.S1_at11/1110+2414285..2416799hypothetical protein
LOC_Os10g05000Os.46564.1.S1_at1/1110+2420647..2423219F-box domain containing protein, expressed
LOC_Os10g05010Os.52741.1.S1_at11/1110+2429826..2432129expressed protein
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed
LOC_Os10g05030OsAffx.30286.1.S1_at11/1110+2442198..2442741hypothetical protein
LOC_Os10g05040Os.47463.1.S1_x_at6/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040Os.14491.2.S1_x_at4/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040OsAffx.16187.1.S1_at1/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9427.1.S1_at--414--2931Chr10:2438655..2438679 (25 bp)
AAGGCGGTGGTCATGGAGGGTCTAC
LOC_Os10g05020
Os.9427.1.S1_at--1091--3211Chr10:2438554..2438578 (25 bp)
CAAGGGCACACTGGTGAACTTCACG
LOC_Os10g05020
Os.9427.1.S1_at--701--2051Chr10:2438537..2438561 (25 bp)
ACTTCACGGTGGCCGACATGGGCAT
LOC_Os10g05020
Os.9427.1.S1_at--713--5671Chr10:2438436..2438460 (25 bp)
GACATCACCGGGACGAGGGAGATCA
LOC_Os10g05020
Os.9427.1.S1_at--216--3491Chr10:2438248..2438272 (25 bp)
CATGGAGAAGCCTCTCCGGGCGCGC
LOC_Os10g05020
Os.9427.1.S1_at--649--3811Chr10:2438220..2438244 (25 bp)
CTGCCAAGAGCCGTCACTGTTTGAC
LOC_Os10g05020
Os.9427.1.S1_at--1--4511Chr10:2438211..2438235 (25 bp)
GCCGTCACTGTTTGACTCTGGGTGA
LOC_Os10g05020
Os.9427.1.S1_at--603--151Chr10:2438164..2438188 (25 bp)
ATTAGACATTTGACACTCTCTCGCT
LOC_Os10g05020
Os.9427.1.S1_at--684--211Chr10:2438157..2438181 (25 bp)
ATTTGACACTCTCTCGCTAATGTAG
LOC_Os10g05020
Os.9427.1.S1_at--497--5631Chr10:2438153..2438177 (25 bp)
GACACTCTCTCGCTAATGTAGTTTC
LOC_Os10g05020
Os.9427.1.S1_at--1025--4831Chr10:2438142..2438166 (25 bp)
GCTAATGTAGTTTCATGCTTTGTAA
LOC_Os10g05020
Target Sequence 
AAGGCGGTGGTCATGGAGGGTCTACGGCGACACCCGCCGGGGCACTTCGTGCTCCCGCACGCGCCGGCGGAGGACATGGA
GCTCGGCGGGTACACGATCCCCAAGGGCACACTGGTGAACTTCACGGTGGCCGACATGGGCATGGACGGGGCGGCGTGGG
ACAGGCCGAGGGAGTTCCTGCCGGAGAGGTTCATGGCCGGCGGCGACGGCGAGGGGGTGGACATCACCGGGACGAGGGAG
ATCAGGATGATGCCGTTCGGCGCCGGGCGGAGGATCTGCCCGGGGCTGGGCGTGGCGACGCTGCACCTGGAGTACTTCGT
GGCGAACATGGTGGCGGCGTTCGAGTGGCGGGCGGCGGAGGGGGAGGCGGTGGACGTCGACGGCGAGAAGCTCGAGTTCA
CCGTCGTCATGGAGAAGCCTCTCCGGGCGCGCCTCCTGCCAAGAGCCGTCACTGTTTGACTCTGGGTGANCTTTGACATT
TGGGGGGGTTTATTAGACATTTGACACTCTCTCGCTAATGTAGTTTCATGCTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis