Browse Element(s) Details


Os.9445.1.S1_at

Description gb:C99054
DB_XREF= gi:3761806
DB_XREF=C99054
CLONE=E4384_2Z
TID=Os.9445.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9445 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192765.1 (A.thaliana) probable wound-induced protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g542408/11wound induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed
LOC_Os04g54190Os.17555.1.S1_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54190OsAffx.26598.1.S1_x_at11/114+32059131..32062380Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os04g54200Os.4807.1.S1_at11/114+32067611..32072391diacylglycerol kinase, putative, expressed
LOC_Os04g54210Os.55270.1.S1_s_at11/114+32075929..32076594expressed protein
LOC_Os04g54220OsAffx.4174.1.S1_at10/114+32076784..32077471hypothetical protein
LOC_Os04g54230OsAffx.14410.1.S1_s_at11/114+32078507..32079062expressed protein
LOC_Os04g54230Os.9913.1.S1_at8/114+32078507..32079062expressed protein
LOC_Os04g54240OsAffx.14412.2.S1_s_at11/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54240Os.9445.1.S1_at8/114+32082558..32083390wound induced protein, putative, expressed
LOC_Os04g54250OsAffx.8980.1.S1_at5/114+32085753..32087552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9445.1.S1_at--176--10311Chr04:32082732..32082756 (25 bp)
TTTCTGGGAGAAAGGTGTTCTGTTC
LOC_Os04g54240
Os.9445.1.S1_at--406--1051Chr04:32082720..32082744 (25 bp)
AGGTGTTCTGTTCTTTTGATACTGC
LOC_Os04g54240
Os.9445.1.S1_at--1074--6711Chr04:32082718..32082740 (23 bp)
GTTCTGTTCTTTTGATACTGCACTA
LOC_Os04g54240
Os.9445.1.S1_at--1018--8791NONE
TGTTCTTTTGATACTGCACTACCGT
NONE
Os.9445.1.S1_at--843--9531NONE
TCTTTTGATACTGCACTACCGTAAA
NONE
Os.9445.1.S1_at--811--6451NONE
GATACTGCACTACCGTAAAATTTAT
NONE
Os.9445.1.S1_at--75--5591Chr04:32082665..32082689 (25 bp)
GAAATGGTAGCAATCTAGTTTGTAC
LOC_Os04g54240
Os.9445.1.S1_at--734--7851Chr04:32082660..32082684 (25 bp)
GGTAGCAATCTAGTTTGTACTTAAT
LOC_Os04g54240
Os.9445.1.S1_at--822--6831Chr04:32082648..32082672 (25 bp)
GTTTGTACTTAATACTTACCACTTG
LOC_Os04g54240
Os.9445.1.S1_at--455--3091Chr04:32082638..32082662 (25 bp)
AATACTTACCACTTGTTACTGAATG
LOC_Os04g54240
Os.9445.1.S1_at--653--1711Chr04:32082631..32082655 (25 bp)
ACCACTTGTTACTGAATGATAGTCA
LOC_Os04g54240
Target Sequence 
TTTCTGGGAGAAAGGTGTTCTGTTCTTTTGATACTGCACTACCGTAAAATTTATGATCGAAATGATGGAAGAAATGGTAG
CAATCTAGTTTGTACTTAATACTTACCACTTGTTACTGAATGATAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis