Browse Element(s) Details


Os.9456.1.S1_at

Description gb:AK103708.1
DB_XREF= gi:32988917
TID=Os.9456.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136O19, full insert sequence.
FL= gb:AK103708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2817011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28120OsAffx.12244.1.S1_at11/112+16646594..16648663hypothetical protein
LOC_Os02g28120OsAffx.30891.1.S1_x_at2/112+16646594..16648663hypothetical protein
LOC_Os02g28130NANA2+16655024..16655625hypothetical protein
LOC_Os02g28140OsAffx.12245.1.S1_at7/112+16658237..16659346hypothetical protein
LOC_Os02g28150OsAffx.22896.1.S1_x_at1/112+16664420..16666081transposon protein, putative, unclassified
LOC_Os02g28160OsAffx.21779.3.S1_at11/112+16667596..16668271hypothetical protein
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed
LOC_Os02g28180OsAffx.13052.2.S1_at11/112+16674535..16677212transposon protein, putative, unclassified
LOC_Os02g28190NANA2+16684504..16684719hypothetical protein
LOC_Os02g28200OsAffx.12252.3.S1_x_at11/112+16686137..16687654Transferase family protein
LOC_Os02g28210OsAffx.24473.1.S1_at11/112+16693441..16693728hypothetical protein
LOC_Os02g28220Os.8902.1.S1_at11/112+16696291..16698079Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9456.1.S1_at--843--551Chr02:16672965..16672989 (25 bp)
ATCCGGACTACTGGAAGAGGTGCAT
LOC_Os02g28170
Os.9456.1.S1_at--757--8951Chr02:16672664..16672688 (25 bp)
TGACATGGATCGATCAGCTCCGGGC
LOC_Os02g28170
Os.9456.1.S1_at--48--831Chr02:16672660..16672684 (25 bp)
ATGGATCGATCAGCTCCGGGCCACT
LOC_Os02g28170
Os.9456.1.S1_at--688--1991Chr02:16672575..16672599 (25 bp)
ACTCGCTGGGCTTCCGTGGGATTCG
LOC_Os02g28170
Os.9456.1.S1_at--1104--10331Chr02:16672522..16672546 (25 bp)
TTTTCTTGGAAAATACCGTAGCATT
LOC_Os02g28170
Os.9456.1.S1_at--391--3091Chr02:16672511..16672535 (25 bp)
AATACCGTAGCATTGTACCGACAGG
LOC_Os02g28170
Os.9456.1.S1_at--197--1551Chr02:16672503..16672527 (25 bp)
AGCATTGTACCGACAGGGTGTGTTC
LOC_Os02g28170
Os.9456.1.S1_at--254--2131Chr02:16672491..16672515 (25 bp)
ACAGGGTGTGTTCGCTAAGTTGCCA
LOC_Os02g28170
Os.9456.1.S1_at--1143--7411Chr02:16672484..16672508 (25 bp)
GTGTTCGCTAAGTTGCCAGCGTGGA
LOC_Os02g28170
Os.9456.1.S1_at--525--6691Chr02:16672473..16672497 (25 bp)
GTTGCCAGCGTGGAACAGTCTGCAT
LOC_Os02g28170
Os.9456.1.S1_at--788--4351Chr02:16672469..16672493 (25 bp)
CCAGCGTGGAACAGTCTGCATGGTA
LOC_Os02g28170
Target Sequence 
ATCCGGACTACTGGAAGAGGTGCATGGAACACGTTGGAGGGATGAGCGCGAGCGACGGTCCGCCGTTAGCGNTGGCCGGG
TCGCCGAGGTTCCGCGTGTACGACGTGGACTTCGGGTTCGGGAGGCCGGCGAAGGTGGACGTCGTGTCCGTGGCGAAGAC
CGGGGCGATCTCGGTGGCGGAGGGCCGCCGCGGCGGCATTGAGGTGGGCGTCGGTTTGCCGCCGGAGCGGATGGAGAGGT
TCCGGAGGTGCTTCGCTGATGCCGTCGCGTGGCTATCGTCGCCGTCTCGTCCAGTGACACGTGACATGGATCGATCAGCT
CCGGGCCACTCCCCGGCGTAGGCGGCGGCGGCAGGCAGGCAGGCAGGCAGGCANNNNNNNNNNNNCGTGTCGCTTGGNTT
CCACTCGCTGGGCTTCCGTGGGATTCGATGGGCTGGTTCCCCGTACCCTTATNTTTTTTCTTGGAAAATACCGTAGCATT
GTACCGACAGGGTGTGTTCGCTAAGTTGCCAGCGTGGAACAGTCTGCATGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis