Browse Element(s) Details


Os.9468.1.S1_at

Description gb:AK059102.1
DB_XREF= gi:32969120
TID=Os.9468.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D02, full insert sequence.
FL= gb:AK059102.1 gb:AK120712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4150011/11thiosulfate sulfurtransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41450Os.54788.1.S1_at11/1112+25644266..25646033F-box domain containing protein, expressed
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein
LOC_Os12g41470OsAffx.20076.1.S1_at11/1112+25658742..25659274hypothetical protein
LOC_Os12g41480NANA12+25661287..25661855hypothetical protein
LOC_Os12g41490Os.9468.2.A1_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490Os.9468.2.A2_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490OsAffx.20077.1.S1_x_at1/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_x_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41520OsAffx.20078.1.S1_at10/1112+25679616..25680740receptor-like protein kinase, putative
LOC_Os12g41530OsAffx.20079.1.S1_x_at1/1112+25685019..25687067Protein kinase domain containing protein
LOC_Os12g41540OsAffx.20079.1.S1_x_at11/1112+25689204..25691635lectin protein kinase, putative, expressed
LOC_Os12g41550Os.55384.1.S1_s_at11/1112+25692632..25693149expressed protein
LOC_Os12g41560Os.49172.1.S1_at11/1112+25694108..25695760expressed protein
LOC_Os12g41570OsAffx.7856.1.S1_at11/1112+25696107..25696979hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004792molecular_functionthiosulfate sulfurtransferase activity
GO:0016783molecular_functionsulfurtransferase activity
GO:0016784molecular_function3-mercaptopyruvate sulfurtransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9468.1.S1_at--150--211Chr12:25669733..25669757 (25 bp)
ATTTGATGGTGCAGTTCCAGAGCCA
LOC_Os12g41500
Os.9468.1.S1_at--726--8051Chr12:25669677..25669701 (25 bp)
GGAGCAAATGTGTTCCTTTCCCTCA
LOC_Os12g41500
Os.9468.1.S1_at--422--9311Chr12:25669460..25669683 (25 bp)
TCCCTCAGTTGCTTGACAGTTCGCA
LOC_Os12g41500
Os.9468.1.S1_at--993--1011Chr12:25668968..25668992 (25 bp)
AGGTATATCGCTTGATCAACCCCTG
LOC_Os12g41500
Os.9468.1.S1_at--162--8231Chr12:25668799..25668823 (25 bp)
GGCAAAACCGACGTTCCTGTATATG
LOC_Os12g41500
Os.9468.1.S1_at--105--9231Chr12:25668737..25668761 (25 bp)
TCCAGTTGCCACTGCTGCTTAATTA
LOC_Os12g41500
Os.9468.1.S1_at--1109--8031Chr12:25668693..25668717 (25 bp)
GGAGAACTCTTGATTATACTTCCCC
LOC_Os12g41500
Os.9468.1.S1_at--278--8131Chr12:25668596..25668620 (25 bp)
GGAAGGGACGCCATTAGACCGGCCT
LOC_Os12g41500
Os.9468.1.S1_at--1021--9931Chr12:25668582..25668606 (25 bp)
TAGACCGGCCTTTTCGTTGTAAATG
LOC_Os12g41500
Os.9468.1.S1_at--531--691Chr12:25668525..25668549 (25 bp)
ATGAGCTGTTGATCTACCTTTCTGA
LOC_Os12g41500
Os.9468.1.S1_at--234--1751Chr12:25668510..25668534 (25 bp)
ACCTTTCTGAAGTCCCTTTTATATG
LOC_Os12g41500
Target Sequence 
ATTTGATGGTGCAGTTCCAGAGCCACGGAAAGGAATAAGAAGTGGGCATGTGCCTGGGAGCAAATGTGTTCCTTTCCCTC
AGTTGCTTGACAGTTCGCAAAAGCTATTACCTCCAGAAGAGCTCCGTAAACGATTTGAACAAGAAGGTATATCGCTTGAT
CAACCCCTGGTGNCCTCATGTGGTACTGGTGTGACAGCATGTATATTAGCTCTGGGCCTCCACCGCCTTGGCAAAACCGA
CGTTCCTGTATATGATGGATCATGGACTGAATGGGGAGCCCATCCTGACACTCCAGTTGCCACTGCTGCTTAATTAGTAC
CAGTTACAATCTATTGGAGAACTCTTGATTATACTTCCCCCTGTACCGTGAATGGTCCAATGGAAGGAAGAAAGCAAAGG
AGATTGGAGAGGTCGGCTGGGCGTAGGTTGGGGGGAAGGGACGCCATTAGACCGGCCTTTTCGTTGTAAATGGTTTTGAA
AATAGACATACACTGTGAATTATTATGAGCTGTTGATCTACCTTTCTGAAGTCCCTTTTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis