Browse Element(s) Details


Os.9497.1.S1_at

Description gb:AK062006.1
DB_XREF= gi:32972024
TID=Os.9497.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D12, full insert sequence.
FL= gb:AK071434.1 gb:AK062006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0347010/11homoserine dehydrogenase family protein, expressed
LOC_Os12g0319010/11homoserine dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03430Os.54171.1.S1_at11/1111+1305317..1307674CDC45-like protein, expressed
LOC_Os11g03440Os.3389.2.S1_at4/1111+1316545..1317682Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g03450Os.53881.1.S1_s_at1/1111+1323620..1324078hypothetical protein
LOC_Os11g03460Os.28138.1.S1_at1/1111+1325006..1327927expressed protein
LOC_Os11g03470Os.9497.1.S1_at10/1111+1328443..1332416homoserine dehydrogenase family protein, expressed
LOC_Os11g03484OsAffx.7468.1.S1_at11/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03484Os.11241.1.S1_at8/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03500Os.52496.1.S1_at2/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03500Os.11241.1.S1_at1/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03510Os.23290.2.S1_s_at11/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03510OsAffx.30797.1.S1_at9/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004412molecular_functionhomoserine dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9497.1.S1_at--308--6652Chr12:1216763..1216787 (25 bp)
GTTGAGAGTTTATACCCCAGTGAAT
LOC_Os12g03190
Os.9497.1.S1_at--694--8152Chr12:1216640..1216664 (25 bp)
GGAAATGTTCTTCGCTATGTCTGTA
LOC_Os12g03190
Os.9497.1.S1_at--256--3312Chr12:1216445..1216629 (25 bp)
CACAGGGTGCCAAGTGGGCCTTGAA
LOC_Os12g03190
Os.9497.1.S1_at--182--5472Chr12:1216420..1216444 (25 bp)
GAACTCCCGAAAAACTCTGCACTGG
LOC_Os12g03190
Os.9497.1.S1_at--1125--9852Chr12:1215994..1216018 (25 bp)
TACAGCAGATGCTACGAGAGCGCCC
LOC_Os12g03190
Os.9497.1.S1_at--54--1372Chr12:1215978..1216002 (25 bp)
AGAGCGCCCCTCTGGTGATTCAGGG
LOC_Os12g03190
Os.9497.1.S1_at--116--8092Chr12:1215949..1215973 (25 bp)
GGAGCTGGCAATGATACCACTGCAG
LOC_Os12g03190
Os.9497.1.S1_at--998--6732Chr12:1215919..1215943 (25 bp)
GTTCTTGCTGACATACTTGATCTCC
LOC_Os12g03190
Os.9497.1.S1_at--623--332Chr12:1215907..1215931 (25 bp)
ATACTTGATCTCCAGGATCTCTTCC
LOC_Os12g03190
Os.9497.1.S1_at--1074--6412Chr12:1215892..1215916 (25 bp)
GATCTCTTCCACAAAACGGCTTGAA
LOC_Os12g03190
Os.9497.1.S1_at--55--5431NONE
GAACCAATGAGCAGTGACATCCTTT
NONE
Target Sequence 
GTTGAGAGTTTATACCCCAGTGAATTNGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCT
TGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCA
CAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAG
ATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGT
TCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAANCTATGTCTTNTAGGTCGAACCGCAGAGT
TGATTNTGAGTCTTGTGACTTGTGGGGTTNTTTTGGTCACAGTATTACNTAAATAAATCTTGAGCAGACATATCAATTTT
TGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAATGAGCAGTGACATCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis