Browse Element(s) Details


Os.9501.1.S1_at

Description gb:AK104918.1
DB_XREF= gi:32990127
TID=Os.9501.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F07, full insert sequence.
FL= gb:AK070737.1 gb:AK104918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4261011/11YABBY protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42590OsAffx.20091.1.S1_at8/1112+26418379..26420581hypothetical protein
LOC_Os12g42600OsAffx.32160.1.S1_at11/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42600Os.24076.1.S1_at1/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed
LOC_Os12g42620OsAffx.7870.1.S1_at11/1112+26456780..26457028hypothetical protein
LOC_Os12g42630Os.57031.1.A1_at11/1112+26464577..26465743transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g42640Os.53965.1.S1_at11/1112+26467261..26470961retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g42650Os.51828.2.S1_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650OsAffx.32161.1.S1_x_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650Os.51828.2.S1_x_at5/1112+26472677..26473582expressed protein
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9501.1.S1_at--936--7951Chr12:26452167..26452191 (25 bp)
GGATCAAAGCAAACAACCCCGACAT
LOC_Os12g42610
Os.9501.1.S1_at--295--4231Chr12:26452185..26452209 (25 bp)
CCGACATTAGCCACAGGGAAGCCTT
LOC_Os12g42610
Os.9501.1.S1_at--1016--7611Chr12:26452200..26452224 (25 bp)
GGGAAGCCTTCAGCACAGCAGCCAA
LOC_Os12g42610
Os.9501.1.S1_at--82--7611Chr12:26453187..26453211 (25 bp)
GGGCACATTATCCAAACATCCATTT
LOC_Os12g42610
Os.9501.1.S1_at--568--5351Chr12:26453287..26453311 (25 bp)
GAAGATCCAAGGTTTCTACTCATAG
LOC_Os12g42610
Os.9501.1.S1_at--990--2271Chr12:26453420..26453444 (25 bp)
AAATGCTGCCACCTTACCTTTGTTC
LOC_Os12g42610
Os.9501.1.S1_at--816--291Chr12:26453539..26453563 (25 bp)
ATAGCTCATCGATCGACTGAAAGGC
LOC_Os12g42610
Os.9501.1.S1_at--850--351Chr12:26453599..26453623 (25 bp)
ATAAGTATGTTTGAAGCTAGCTAGC
LOC_Os12g42610
Os.9501.1.S1_at--892--1591Chr12:26453621..26453645 (25 bp)
AGCTGGCTAGTTCTTTATTTCCTCT
LOC_Os12g42610
Os.9501.1.S1_at--982--10191Chr12:26453636..26453660 (25 bp)
TATTTCCTCTTTATGTCTTCCAATG
LOC_Os12g42610
Os.9501.1.S1_at--644--10491Chr12:26453680..26453704 (25 bp)
TTAACAGCACTGTCGACGGATGCAA
LOC_Os12g42610
Target Sequence 
GGATCAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATTGGGCACATTATCCAAAC
ATCCATTTTGGCCTAAGCCCNGGCCATGAGGGTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCAACTGCTCCATCTTC
CAAGAAGATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGANACCGATACCGCAAATAGGAGGAAGAGCAT
CAAGAGCACAAAACATATATATACTGTGAGTAAAGAAGCAAAGGAAAAAAGAAAANNAAATGCTGCCACCTTACCTTTGT
TCATGACCAAAAAACTTGTGAAGACGTANGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATAC
AAAAAATCAAGCTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTNGACCATAATGTTGTTACATGTATAA
GTATGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTATTTCCTCTTTATGTCTTCCAATGAAATTAATTTGCAAACATATTA
ACAGCACTGTCGACGGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis