Browse Element(s) Details


Os.9504.1.S1_at

Description gb:AK067721.1
DB_XREF= gi:32977739
TID=Os.9504.1
CNT=67
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9504 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for alpha-tubulin (clone OSTA-274)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119N24, full insert sequence.
FL= gb:AK069140.1 gb:AK067721.1 gb:AK104900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3873011/11Tubulin alpha-1 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein
LOC_Os07g38680Os.47130.4.A1_x_at4/117+23224138..23224461retrotransposon protein, putative, unclassified
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g38700OsAffx.5569.1.S1_at11/117+23226628..23227611hypothetical protein
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein
LOC_Os07g38720OsAffx.28816.1.S1_at11/117+23233955..23234500hypothetical protein
LOC_Os07g38730Os.9504.1.S1_at11/117+23242103..23245524Tubulin alpha-1 chain, putative, expressed
LOC_Os07g38740Os.57300.1.S1_at10/117+23246386..23246953expressed protein
LOC_Os07g38750OsAffx.16617.1.S1_at11/117+23249643..23250590AP2 domain containing protein
LOC_Os07g38760OsAffx.5570.1.S1_at11/117+23255051..23263600HEAT repeat family protein, expressed
LOC_Os07g38770NANA7+23266647..23268005transposon protein, putative, Pong sub-class
LOC_Os07g38780OsAffx.11235.1.S1_at1/117+23268550..23269841transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0045298cellular_componenttubulin
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9504.1.S1_at--1158--3891Chr07:23244932..23244954 (23 bp)
CTGGTGCCCTACTGGATTCAAGTGT
LOC_Os07g38730
Os.9504.1.S1_at--1156--3731Chr07:23245001..23245025 (25 bp)
CTAAGGTTCAGCGTGCAGTGTGCAT
LOC_Os07g38730
Os.9504.1.S1_at--916--2471Chr07:23245036..23245060 (25 bp)
AACACTGCTGTTGCTGAGGTTTTCT
LOC_Os07g38730
Os.9504.1.S1_at--380--9111Chr07:23245047..23245071 (25 bp)
TGCTGAGGTTTTCTCGCGCATCGAC
LOC_Os07g38730
Os.9504.1.S1_at--575--6711Chr07:23245077..23245101 (25 bp)
GTTCGACTTGATGTATGCTAAGCGT
LOC_Os07g38730
Os.9504.1.S1_at--6--4851Chr07:23245093..23245117 (25 bp)
GCTAAGCGTGCGTTTGTGCACTGGT
LOC_Os07g38730
Os.9504.1.S1_at--802--5311Chr07:23245138..23245162 (25 bp)
GAAGGTGAATTCTCAGAAGCCCGTG
LOC_Os07g38730
Os.9504.1.S1_at--235--1451Chr07:23245152..23245176 (25 bp)
AGAAGCCCGTGAGGACTTGGCTGCC
LOC_Os07g38730
Os.9504.1.S1_at--333--9991Chr07:23245366..23245390 (25 bp)
TAGCCCCTCGTTGGCCATGATTGTT
LOC_Os07g38730
Os.9504.1.S1_at--144--7851Chr07:23245440..23245464 (25 bp)
GGTACATATGCCATTCTGAGCTGAA
LOC_Os07g38730
Os.9504.1.S1_at--765--6911Chr07:23245475..23245499 (25 bp)
GTATGCTCTCTATGCATGGTCCAAT
LOC_Os07g38730
Target Sequence 
CTGGTGCCCTACTGGATTCAAGTGTGGCATCAACTACCAGCCACCCTCTGTTGTCCCTGGTGGTGACCTGGCTAAGGTTC
AGCGTGCAGTGTGCATGATCAGCAACAACACTGCTGTTGCTGAGGTTTTCTCGCGCATCGACCACAAGTTCGACTTGATG
TATGCTAAGCGTGCGTTTGTGCACTGGTACGTTGGTGAGGGAATGGAAGAAGGTGAATTCTCAGAAGCCCGTGAGGACTT
GGCTGCCCTTGAGAAGGACTATGAGGAAGTCGGNGCCGAGGGTGCAGACGACGAGAACGACGATGGAGAAGACTATTAGT
AGCTGGTTAATAAGTAGTTCTCTGGTTAATGATTGGTTTGTCAGTATACTCCGGTTCCNTTGCATTGCATATTCCTGTTA
TGTGTGTTTACTTTTTGTACTGTGCTAAACTGTTGTTAGCCCCTCGTTGGCCATGATTGTTCATATCTTCCCATTTTGCT
GTGCATTGCTTGNTACTCCCCCCCAAGCTTGGTACATATGCCATTCTGAGCTGAATTGCAAAACTGTATGCTCTCTATGC
ATGGTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis