Browse Element(s) Details


Os.9572.1.S1_at

Description gb:AK070586.1
DB_XREF= gi:32980610
TID=Os.9572.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061B03, full insert sequence.
FL= gb:AK070586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1786010/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17840NANA2+10319476..10320009hypothetical protein
LOC_Os02g17850Os.13748.1.S1_at11/112+10330713..10333784tobamovirus multiplication protein 2B, putative, expressed
LOC_Os02g17860OsAffx.2658.1.S1_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860OsAffx.2658.1.S1_x_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860Os.9572.1.S1_at10/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17870Os.7497.1.S1_at11/112+10351704..10354070Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
LOC_Os02g17880OsAffx.24928.1.S1_at11/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17880OsAffx.12340.1.S1_at1/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9572.1.S1_at--247--4251Chr02:10339005..10339025 (21 bp)
CCGTCCGTCCAGATCTAAGGTTTTG
NONE
Os.9572.1.S1_at--287--9731Chr02:10341837..10341861 (25 bp)
TCAAGGGCAGCTTCACATTCATGGT
LOC_Os02g17860
Os.9572.1.S1_at--589--7771Chr02:10342018..10342042 (25 bp)
GGTGCCCCTGGAAATCAACGTGTAA
LOC_Os02g17860
Os.9572.1.S1_at--382--2291Chr02:10342088..10342112 (25 bp)
AAAGTCGGTTCTGATCGTCGGCAAT
LOC_Os02g17860
Os.9572.1.S1_at--547--7191Chr02:10342104..10342128 (25 bp)
GTCGGCAATTGAACTATGGTGGCTT
LOC_Os02g17860
Os.9572.1.S1_at--512--451Chr02:10342131..10342155 (25 bp)
ATGCTTTACCGGTGAACCACTGTTT
LOC_Os02g17860
Os.9572.1.S1_at--295--6831Chr02:10342152..10342176 (25 bp)
GTTTACTACTTTACTATACTGCTTT
LOC_Os02g17860
Os.9572.1.S1_at--145--5611Chr02:10342216..10342240 (25 bp)
GACAATGACTCCCTTTTATCTTTTG
LOC_Os02g17860
Os.9572.1.S1_at--688--6931Chr02:10342288..10342312 (25 bp)
GTAGGACTGGAAATCCACCACTATT
LOC_Os02g17860
Os.9572.1.S1_at--909--3371Chr02:10342303..10342327 (25 bp)
CACCACTATTATCATGTCCATCTGT
LOC_Os02g17860
Os.9572.1.S1_at--361--7271Chr02:10342318..10342342 (25 bp)
GTCCATCTGTATATGTCATGCTTAG
LOC_Os02g17860
Target Sequence 
CCGTCCGTCCAGATCTAAGGTTTTGACACAATGGGGTTATTCAAGGGCAGCTTCACATTCATGGTGGGAATGGGATGTGG
TGTNTATGTAGCTCAGAACTACAATGTTCCAAACATCAAGAAGCTTTTCAACACATATGTTTTCATGGCAAAGCACATCG
NGGAAACGTNTCGGAAGCCAAAGAAAGATGATGACTGATGATTTNCACAGATTTTCATTTTGGTGCCCCTGGAAATCAAC
GTGTAACTAACATGATACAGAAATATGATGTTCATGAATGGGGAAGTCGGTAAAGTCGGTTCTGATCGTCGGCAATTGAA
CTATGGTGGCTTAAATGCTTTACCGGTGAACCACTGTTTACTACTTTACTATACTGCTTTTAGGGGGGTTGTTAGAGAGA
CAGAAGTTGCTGTCCAGATGACAATGACTCCCTTTTATCTTTTGTCGGTGCTACGAAAATGCACTTGACCTTTTTTTGGC
TGTTGAAATGTGTAGGACTGGAAATCCACCACTATTATCATGTCCATCTGTATATGTCATGCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis