Browse Element(s) Details


Os.9589.1.S1_at

Description gb:AK066076.1
DB_XREF= gi:32976094
TID=Os.9589.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050J18, full insert sequence.
FL= gb:AK070794.1 gb:AK066076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3404011/11TBC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9589.1.S1_at--1123--3371Chr09:20087261..20087285 (25 bp)
CAGCGCCTTGTTTTCAGGTTGAAAG
LOC_Os09g34040
Os.9589.1.S1_at--569--4611Chr09:20086842..20086866 (25 bp)
GCGTTTCGTTGGTTCAATTGTCTTA
LOC_Os09g34040
Os.9589.1.S1_at--318--7391Chr09:20086739..20086760 (22 bp)
GTGAGATTCCTTTTCATCTTGTAAC
LOC_Os09g34040
Os.9589.1.S1_at--706--10811Chr09:20086710..20086734 (25 bp)
TTGTGGGATACCTACCTTGCTGAAG
LOC_Os09g34040
Os.9589.1.S1_at--509--2951Chr09:20086688..20086712 (25 bp)
AAGGCGATTATCTACCGGATTTTCT
LOC_Os09g34040
Os.9589.1.S1_at--315--391Chr09:20086657..20086678 (22 bp)
ATCAGCTAGCTTTTTGTTAACGTGG
LOC_Os09g34040
Os.9589.1.S1_at--702--1351Chr09:20086435..20086459 (25 bp)
AGAGATGGTCATGTTCCTTCAGCAC
LOC_Os09g34040
Os.9589.1.S1_at--295--4091Chr09:20086406..20086430 (25 bp)
CGACGAGGAACTGGGCTCACCATGA
LOC_Os09g34040
Os.9589.1.S1_at--486--1311Chr09:20086376..20086400 (25 bp)
AGATGGTGCTCTCCAGGGCTTACAT
LOC_Os09g34040
Os.9589.1.S1_at--687--731Chr09:20086341..20086365 (25 bp)
ATGTTCAAAAGCTCGCCAAGTCACC
LOC_Os09g34040
Os.9589.1.S1_at--438--10271Chr09:20086268..20086292 (25 bp)
TTTGATGTACTCTAGACTTGTCCCC
LOC_Os09g34040
Target Sequence 
CAGCGCCTTGTTTTCAGGTTGAAAGAACTTGTTCATCGTATAGATGAACCNTGTNTCAAAGCACATGGAGGAACAAGGAT
TGGACTTTCTTCAGTTTGCGTTTCGTTGGTTCAATTGTCTTATGATTCGTGAGATTCCTTTTCATCTTGTAACACGCTTG
TGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGTGGTC
AGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATG
AGCTTGAGATGGTGCTCTCCAGGGCTTACATGTGGCACACAATGTTCAAAAGCTCGCCAAGTCACCTCGCCANGCTAGGA
TACCCGATAATCATATCTGTAATCTATGACCTGATTTTGATGTACTCTAGACTTGTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis