Browse Element(s) Details


Os.9591.1.S1_at

Description gb:AK103140.1
DB_XREF= gi:32988349
TID=Os.9591.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120G10, full insert sequence.
FL= gb:AK103140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5947011/115-azacytidine resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified
LOC_Os03g59430Os.52136.1.S1_at11/113+33768444..33773080Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os03g59440Os.4965.1.S1_at11/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59440Os.30611.1.S1_at1/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59450Os.17876.1.S1_at11/113+33776876..33780585transporter, putative, expressed
LOC_Os03g59460Os.54163.1.S1_at3/113+33781769..33784143bZIP transcription factor family protein
LOC_Os03g59470Os.9591.1.S1_at11/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59470OsAffx.29946.2.S1_at1/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59480OsAffx.25768.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59480OsAffx.25768.1.S1_x_at11/113+33789074..33793670expressed protein
LOC_Os03g59480Os.19198.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59500NANA3+33803951..33809773retrotransposon protein, putative, unclassified
LOC_Os03g59510Os.28943.1.S1_x_at4/113+33810533..33813668retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9591.1.S1_at--299--951Chr03:33785254..33785278 (25 bp)
AGGAACAGGCAATCACCCTTTGCAG
LOC_Os03g59470
Os.9591.1.S1_at--1162--6891Chr03:33785167..33785191 (25 bp)
GTATCATACGTGACAAGCGCCTCAG
LOC_Os03g59470
Os.9591.1.S1_at--741--2671Chr03:33785153..33785177 (25 bp)
AAGCGCCTCAGCTACATGATGCGAG
LOC_Os03g59470
Os.9591.1.S1_at--807--4072Chr12:23355634..23355925 (25 bp)
CGAGAGCCTTTCCTTTTTGATGTAA
NONE
Os.9591.1.S1_at--233--7031Chr03:33785106..33785130 (25 bp)
GTACATAACCTTGTCCCAGATTAAT
LOC_Os03g59470
Os.9591.1.S1_at--203--2971Chr03:33785084..33785108 (25 bp)
AATGGAGCTCGTATGCACCAGGAGT
LOC_Os03g59470
Os.9591.1.S1_at--259--8651Chr03:33785027..33785051 (25 bp)
TGGGCAATCTCCTGATACCAGACTA
LOC_Os03g59470
Os.9591.1.S1_at--523--9991Chr03:33784983..33785007 (25 bp)
TACCAATCCAGAGTACCGTTGCATT
LOC_Os03g59470
Os.9591.1.S1_at--535--351Chr03:33784891..33784915 (25 bp)
ATAATTCTTCGAGACCATGGTGGTT
LOC_Os03g59470
Os.9591.1.S1_at--153--8991Chr03:33784802..33784826 (25 bp)
TGAATCCTAGTTAACGTCGTTCTTG
LOC_Os03g59470
Os.9591.1.S1_at--1--8691Chr03:33784759..33784783 (25 bp)
TGTGATGTCATTCTATCCTTTAGCC
LOC_Os03g59470
Target Sequence 
AGGAACAGGCAATCACCCTTTGCAGCTGCTGCTCAAGAAGCTGGGTACCGATACTTTGGTGGGAAGCTGGACGATATCAC
AGTTATCGTATCATACGTGACAAGCGCCTCAGCTACATGATGCGAGAGCCTTTCCTTTTTGATGTAATGTACATAACCTT
GTCCCAGATTAATGGAGCTCGTATGCACCAGGAGTGGATGGCTAGAGTGAGCTGGCTTGCTGGATGGTGGGCAATCTCCT
GATACCAGACTACTTCCTGTAACTAGATGAGTACCAATCCAGAGTACCGTTGCATTTTAGATTCTGAATTGGTGNTGGAA
AACCATGCATATTTTTTTCCTCATGTAGNACTACAAGTAAAAGATAATTCTTCGAGACCATGGTGGTTTTCTTTGGTAAG
AAGAATCACCACTTGGTCGAAAACGAGTTTTGTTGTAAGCACTATGCAANTGTTGAATCCTAGTTAACGTCGTTCTTGTC
TTCTTGTTCTGCTTGCTGTGATGTCATTCTATCCTTTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis