Browse Element(s) Details


Os.9605.1.S1_at

Description gb:AK072837.1
DB_XREF= gi:32982860
TID=Os.9605.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141K21, full insert sequence.
FL= gb:AK072837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6423011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein
LOC_Os03g64260Os.56144.1.S1_at11/113+36240425..36241341AP2 domain containing protein, expressed
LOC_Os03g64269NANA3+36245249..36245845hypothetical protein
LOC_Os03g64280Os.53291.1.S1_at11/113+36257304..36258584oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9605.1.S1_at--677--1471Chr03:36232970..36232994 (25 bp)
AGAATTTCATCCTCAGACAGCCATC
LOC_Os03g64230
Os.9605.1.S1_at--137--9391Chr03:36233128..36233152 (25 bp)
TCGTTACGGGCTCAACAGCTCAGAA
LOC_Os03g64230
Os.9605.1.S1_at--763--10631Chr03:36233165..36233189 (25 bp)
TTCGCACTCTGCTGTGGCAACAGAT
LOC_Os03g64230
Os.9605.1.S1_at--1153--451Chr03:36233191..36233294 (25 bp)
ATCTCCCGCGCTACGAATATACAAG
LOC_Os03g64230
Os.9605.1.S1_at--620--5091Chr03:36233411..36233435 (25 bp)
GCACGACTTCGCAAAGGACCTGGAC
LOC_Os03g64230
Os.9605.1.S1_at--125--8131Chr03:36233432..36233456 (25 bp)
GGACTCGCTTGTTCGCTGGATTTGC
LOC_Os03g64230
Os.9605.1.S1_at--785--10771Chr03:36233497..36233521 (25 bp)
TTGATTGCCTCAGGTGGTCCGGACA
LOC_Os03g64230
Os.9605.1.S1_at--37--9371Chr03:36233545..36233569 (25 bp)
TCGACGTCATTCCATACGACTACGA
LOC_Os03g64230
Os.9605.1.S1_at--410--9951Chr03:36233559..36233583 (25 bp)
TACGACTACGACTTTCAGTACCTAC
LOC_Os03g64230
Os.9605.1.S1_at--885--771Chr03:36233589..36233613 (25 bp)
ATGTGAACTGATTCCATCTCTGCTT
LOC_Os03g64230
Os.9605.1.S1_at--396--211Chr03:36233655..36233679 (25 bp)
ATTTGTTTTGCGGAGACCATCTTAA
LOC_Os03g64230
Target Sequence 
AGAATTTCATCCTCAGACAGCCATCCAGTGTCAAAGAAGAATTCTGGAAATGCGAGGTGGATGTGGAAGAACAGCAGGTG
AGGAGTCGTTACGGGCTCAACAGCTCAGAACCCAACATTCTGTTCGCACTCTGCTGTGGCAACAGATCATCTCCCGCGCT
ACGAATATACAAGGCTGATCGTGTGATGATGGATCTGGAGAAGGCGAAGCTGGAGTATCTGCAGGCATCGNTGGTGGTGA
NCATCGACGAGGAGGAGGCTGATGATCCCAAGCCTCATACACTCCAACATGCACGACTTCGCAAAGGACCTGGACTCGCT
TGTTCGCTGGATTTGCGACCAGCTGCCCACGTCCTGGTCTCTCAGGAAATCCATGGTTGATTGCCTCAGGTGGTCCGGAC
ACCGTCTCAACATCCATCACCTCGTCGACGTCATTCCATACGACTACGACTTTCAGTACCTACTCCCAATGTGAACTGAT
TCCATCTCTGCTTTCTTTCCTTTTTTGCCGGTATATATGTATGAGTATTAATTAATTTGTTTTGCGGAGACCATCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis