Browse Element(s) Details


Os.9606.2.S1_s_at

Description gb:CB651292
DB_XREF= gi:29646285
DB_XREF=OSJNEb16D05.f
CLONE=OSJNEb16D05
TID=Os.9606.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9606 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_189178.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1585011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15850OsAffx.6289.1.S1_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.1.A1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.2.S1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15860OsAffx.17723.1.S1_at11/119+9692656..9694069expressed protein
LOC_Os09g15870NANA9+9697514..9697813hypothetical protein
LOC_Os09g15880NANA9+9704395..9705944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15890Os.46862.1.S1_at5/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15890Os.47130.4.A1_x_at4/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15890OsAffx.28575.1.S1_at1/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15900Os.28943.1.S1_x_at3/119+9712598..9715502retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9606.2.S1_s_at--991--8111Chr09:9681157..9681181 (25 bp)
GGACTGCAGTGAGGCCGGATCTCAA
LOC_Os09g15850
Os.9606.2.S1_s_at--394--51Chr09:9681803..9681827 (25 bp)
ATTGTTGTGTTCCTCAAGTCCTTGT
LOC_Os09g15850
Os.9606.2.S1_s_at--1050--3211Chr09:9681817..9681841 (25 bp)
CAAGTCCTTGTTTCTTTAATAGTAG
LOC_Os09g15850
Os.9606.2.S1_s_at--627--10331Chr09:9681911..9681935 (25 bp)
TTTAATGCAGCACAGTCCATCCAAC
LOC_Os09g15850
Os.9606.2.S1_s_at--310--7271Chr09:9681925..9681949 (25 bp)
GTCCATCCAACCTTAAGCATTGCAA
LOC_Os09g15850
Os.9606.2.S1_s_at--20--1551Chr09:9681940..9681964 (25 bp)
AGCATTGCAATGAGCCAGTAATTTT
LOC_Os09g15850
Os.9606.2.S1_s_at--18--10731Chr09:9682017..9682041 (25 bp)
TTGCTCTTCCAAAATGATGCTGATA
LOC_Os09g15850
Os.9606.2.S1_s_at--397--2251Chr09:9682041..9682065 (25 bp)
AAATTTTCCATCATTCCCATTGTCG
LOC_Os09g15850
Os.9606.2.S1_s_at--331--1471Chr09:9682094..9682118 (25 bp)
AGCAAGGTTAATTTTCCAAGACTAT
LOC_Os09g15850
Os.9606.2.S1_s_at--80--2591Chr09:9682141..9682165 (25 bp)
AACGTATATGGATCTGTATCGACAG
LOC_Os09g15850
Os.9606.2.S1_s_at--958--5011Chr09:9682271..9682295 (25 bp)
GCAGTTTATGAAGAATCGCCTCCAA
LOC_Os09g15850
Target Sequence 
GGACTGCAGTGAGGCCGGATCTCAAAGGGGCAGTTCCTGGATTGCAAAGGAAATATTGTTGTGTTCCTCAAGTCCTTGTT
TCTTTAATAGTAGTAGATTGCAAAGAATAAGGNATAATCAAAAGAAAGTTAGATCTGTCANCAGAAGATNCTGTTGTATT
GAGTTTAATGCAGCACAGTCCATCCAACCTTAAGCATTGCAATGAGCCAGTAATTTTTGATGGATATAAAATCCTTGGGA
GGGACAATGACAGAGAAAATGTAAAGAATTTGCTCTTCCAAAATGATGCTGATAAATTTTCCATCATTCCCATTGTCGGC
CTTGCGGGGATAGGGAAAACAGCTCTAGCAAGGTTAATTTTCCAAGACTATGGAGAAGAGTGGAACTTTGATCAACGTAT
ATGGATCTGTATCGACAGGAAATTAGAGCTTAATAAAATTGCCAATGATATAATTTCACAGGTTAACAAAAAAGAAGAAA
CTATTTCAGAGTTTGTCCTGAATGATCAAATTCATAACAACTTGCAGTTTATGAAGAATCGCCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9606.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis