Browse Element(s) Details


Os.9623.1.A1_at

Description gb:AK111841.1
DB_XREF= gi:37988504
TID=Os.9623.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136H13, full insert sequence.
FL= gb:AK111841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2639011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26349Os.49535.1.A1_at11/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.39411.1.A1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349OsAffx.6362.1.S1_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26349Os.45957.4.S1_x_at1/112+15462135..15471529transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26370Os.10077.1.S1_at11/112+15476870..15480056expressed protein
LOC_Os02g26370Os.10077.2.S1_at10/112+15476870..15480056expressed protein
LOC_Os02g26380OsAffx.24432.1.S1_at11/112+15486938..15487410hypothetical protein
LOC_Os02g26390Os.9623.1.A1_at11/112+15490019..15492569expressed protein
LOC_Os02g26400OsAffx.12202.1.S1_at11/112+15496752..15501303nuclease, EndA/NucM family protein, expressed
LOC_Os02g26410Os.46012.2.S1_x_at6/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.46012.3.S1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.27088.1.A1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26420NANA2+15510255..15513417retrotransposon protein, putative, unclassified
LOC_Os02g26430Os.56922.1.S1_at11/112+15515627..15516852WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9623.1.A1_at--762--5371Chr02:15490850..15490874 (25 bp)
GAAGACACTAAAGCCAGTTCAGGGA
LOC_Os02g26390
Os.9623.1.A1_at--1116--2191Chr02:15490675..15490699 (25 bp)
ACAACAGTAGCAACCAGCCTTCTTT
LOC_Os02g26390
Os.9623.1.A1_at--1038--10772Chr12:3960209..3960231 (22 bp)
TTGATTCCTGAATATGTATGCATGC
NONE
Os.9623.1.A1_at--42--7531Chr02:15490585..15490609 (25 bp)
GTGGACTGGACTAGTTCCAATTGTT
LOC_Os02g26390
Os.9623.1.A1_at--148--5471Chr02:15490542..15490566 (25 bp)
GAACTTTTCAAGCTAGTATCTGCAG
LOC_Os02g26390
Os.9623.1.A1_at--802--1191Chr02:15490528..15490552 (25 bp)
AGTATCTGCAGTTTTCGTCAAAAAA
LOC_Os02g26390
Os.9623.1.A1_at--330--2331Chr02:15490505..15490529 (25 bp)
AAAGTTAGTCTTTGCAGCTCATGCA
LOC_Os02g26390
Os.9623.1.A1_at--1155--4811Chr02:15490489..15490513 (25 bp)
GCTCATGCAAGCTTAAAGTCAACTG
LOC_Os02g26390
Os.9623.1.A1_at--135--7032Chr12:13813072..13813301 (25 bp)
GTACATCAGTACATGCATATCTGCA
NONE
Os.9623.1.A1_at--6--231Chr02:15490413..15490437 (25 bp)
ATATATTGAGCTAAACCCTGCCATA
LOC_Os02g26390
Os.9623.1.A1_at--605--231Chr02:15490379..15490403 (25 bp)
ATATTTTCTTGCCTACTTTCTGTAA
LOC_Os02g26390
Target Sequence 
GAAGACACTAAAGCCAGTTCAGGGATGGAGCAAGGATGATGGAAAGAGCAATGAAATGAAAGAGGAGGNTAGGAGCAAAC
CTACAGAGGAGAGAAAGAGCAAGGTCATGGCCTTGATAGGGAGATTTGAGACGNCCATGTCAGGTTGAGANTGAGAATGA
GGTTGAGAAACTGACACAACAGTAGCAACCAGCCTTCTTTTCATCTTTTGCGAAGTNCCTNCCATTTTGATTCCTGAATA
TGTATGCATGCAATCATGAATTATTGTGGACTGGACTAGTTCCAATTGTTGTGTGCATTGAAAAATGAGAACTTTTCAAG
CTAGTATCTGCAGTTTTCGTCAAAAAAAGTTAGTCTTTGCAGCTCATGCAAGCTTAAAGTCAACTGTACATCAGTACATG
CATATCTGCAAAAGAAAACAGGTGGTTTCCTGGACAAATATATTGAGCTAAACCCTGCCATATTCAATAAAATATTTTCT
TGCCTACTTTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9623.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis