Browse Element(s) Details


Os.9654.2.S1_x_at

Description gb:AK120173.1
DB_XREF= gi:37989796
TID=Os.9654.2
CNT=46
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013032P11, full insert sequence.
FL= gb:AK120173.1 gb:AK062183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3584011/11T-complex protein 11 containing protein, expressed
LOC_Os04g358603/11T-complex protein 11 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g35810OsAffx.26347.1.S1_at11/114+21639715..21641126hypothetical protein
LOC_Os04g35820NANA4+21642556..21642867hypothetical protein
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein
LOC_Os04g35840Os.9654.2.S1_x_at11/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35840Os.9654.1.S1_at9/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35849NANA4+21663556..21664279NA
LOC_Os04g35860Os.9654.2.S1_x_at3/114+21666100..21668934T-complex protein 11 containing protein, expressed
LOC_Os04g35870Os.45957.3.S1_x_at2/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35870Os.45957.4.S1_x_at1/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35880Os.54079.1.S1_x_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35880OsAffx.26349.1.S1_at11/114+21676479..21680433DDT domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9654.2.S1_x_at--118--10571Chr04:21660143..21660167 (25 bp)
TTCTCAAGAGCCTCCAGGCCGGCGA
LOC_Os04g35840
Os.9654.2.S1_x_at--1126--8391Chr04:21660185..21660209 (25 bp)
TGTCCCGGGCGGTCTACTTTGCCTT
LOC_Os04g35840
Os.9654.2.S1_x_at--1022--2672Chr04:21668833..21668857 (25 bp)
AAGCTCGCCGACAGGGTTGTCAAGG
LOC_Os04g35860
Os.9654.2.S1_x_at--727--7132Chr04:21668884..21668908 (25 bp)
GTCATATCAGAGAAGGTCCATGGAC
LOC_Os04g35860
Os.9654.2.S1_x_at--294--8532Chr04:21668904..21668928 (25 bp)
TGGACAATGGTACAAGGCGCTTGCC
LOC_Os04g35860
Os.9654.2.S1_x_at--573--271Chr04:21660396..21660420 (25 bp)
ATAGGGTTTGTGTTGTTTTGTGAAT
LOC_Os04g35840
Os.9654.2.S1_x_at--228--5231Chr04:21660417..21660441 (25 bp)
GAATATACATTACGGATTACGGACT
LOC_Os04g35840
Os.9654.2.S1_x_at--697--31Chr04:21660511..21660535 (25 bp)
ATTGGTAGGCTGATTTCAGTGTCAA
LOC_Os04g35840
Os.9654.2.S1_x_at--898--3092Chr04:21660537..21660561 (25 bp)
AATTAATTCTGGGTGCAGGGCTAAT
LOC_Os04g35840
Os.9654.2.S1_x_at--40--9751Chr04:21660558..21660582 (25 bp)
TAATATGGATGACCCTCACCCCAGA
LOC_Os04g35840
Os.9654.2.S1_x_at--719--3731Chr04:21660572..21660596 (25 bp)
CTCACCCCAGAATTTAGCCAGTGGT
LOC_Os04g35840
Target Sequence 
TTCTCAAGAGCCTCCAGGCCGGCGACANTCGTCTTNCGGTAAGGTGTCCCGGGCGGTCTACTTTGCCTTCCGCGGCGTCG
TCCTCGGTGNCGGCGCCAAGGGCAAGAAGCTAGCCNGAAGCGCCGNCTGCGACGCCTCGGCGCGGCGAAGCTCGCCGACA
GGGTTGTCAAGGCCNGGGGAGGTGCTGATAAAGATGNCAGTCATATCAGAGAAGGTCCATGGACAATGGTACAAGGCGCT
TGCCNTTGTGAAGANCAGAATAGGGTTTGTGTTGTTTTGTGAATATACATTACGGATTACGGACTGTAAATTCTTGTCCT
ACCGGGGTGAGGTAGGAAATATTGGGCATTGTACATAAATTTATATAGGTGTTAATTGGTAGGCTGATTTCAGTGTCAAA
AATTAATTCTGGGTGCAGGGCTAATATGGATGACCCTCACCCCAGAATTTAGCCAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9654.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis