Browse Element(s) Details


Os.9661.1.S1_at

Description gb:AK071184.1
DB_XREF= gi:32981207
TID=Os.9661.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082N23, full insert sequence.
FL= gb:AK071184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0462011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed
LOC_Os03g04600Os.10015.1.S1_s_at11/113+2124876..2129630expressed protein
LOC_Os03g04600Os.10015.1.S1_at11/113+2124876..2129630expressed protein
LOC_Os03g04610Os.20338.1.S1_at3/113+2133780..2134692expressed protein
LOC_Os03g04620Os.9661.1.S1_at11/113+2138442..2142449CCT motif family protein, expressed
LOC_Os03g04630OsAffx.24965.1.S1_at11/113+2149324..2151056Cytochrome P450 family protein
LOC_Os03g04640OsAffx.3130.1.S1_at11/113+2157804..2159327Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0010182biological_processsugar mediated signaling
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9661.1.S1_at--402--2931Chr03:2139290..2139314 (25 bp)
AAGGCTCAAGCTTGGAAGATACCCC
LOC_Os03g04620
Os.9661.1.S1_at--465--2891Chr03:2139260..2139284 (25 bp)
AAGGTGTGCGTCTAACAGCTGAACA
LOC_Os03g04620
Os.9661.1.S1_at--560--2591Chr03:2139029..2139053 (25 bp)
AACGACGAACTCTGTGAAGCTACCA
LOC_Os03g04620
Os.9661.1.S1_at--1013--3711Chr03:2139010..2139034 (25 bp)
CTACCAGATCAAGCTCCCAAGATTT
LOC_Os03g04620
Os.9661.1.S1_at--443--5671Chr03:2138719..2138743 (25 bp)
GACATGCTTGATTCTTCCAATATTT
LOC_Os03g04620
Os.9661.1.S1_at--508--6111Chr03:2138684..2138708 (25 bp)
GAGTGGAATGAACCCTTACGGCTAT
LOC_Os03g04620
Os.9661.1.S1_at--738--7471Chr03:2138603..2138627 (25 bp)
GTGTGTTTTCCTTTCAATTGTGCAA
LOC_Os03g04620
Os.9661.1.S1_at--1149--10371Chr03:2138565..2138589 (25 bp)
TTTTCCCTTGCTCCCAGTAAATAAG
LOC_Os03g04620
Os.9661.1.S1_at--102--631Chr03:2138536..2138560 (25 bp)
ATGCTTTAGAAGCTCTATTCGCAAG
LOC_Os03g04620
Os.9661.1.S1_at--569--7831Chr03:2138500..2138524 (25 bp)
GGTCAAGTTATTGTTTCTGCACACT
LOC_Os03g04620
Os.9661.1.S1_at--30--6851Chr03:2138488..2138512 (25 bp)
GTTTCTGCACACTACTGATTTGTAA
LOC_Os03g04620
Target Sequence 
AAGGCTCAAGCTTGGAAGATACCCCCTACAAAGGTGTGCGTCTAACAGCTGAACAGAGAAAGGAAAAGATCTCCAGGTAC
ATAAAGAAAAGGAACGAAAGGAACTTCAGCAAAAAAATAAAGTACGCTTGTAGAAAAACCTTGGCGGANAGCAGGCCTCG
GGNCCNCNGGAAGGTTTGCCAAGAACGACGAACTCTGTGAAGCTACCAGATCAAGCTCCCAAGATTTTGANCAATATGAA
CATGTTGTGGGAATGAAGGGAGAAGACATGCTTGATTCTTCCAATATTTTGGCACATTTGAGTGGAATGAACCCTTACGG
CTATAAGTACAACAGCACTGTGGAATCCTGGATATAATTCTCATAAACACACAAATTAAAGTGTGTTTTCCTTTCAATTG
TGCAAGCATTAAACACAGTTTTCCCTTGCTCCCAGTAAATAAGACTGATGCTTTAGAAGCTCTATTCGCAAGAGAAGTGC
TTAGGTCAAGTTATTGTTTCTGCACACTACTGATTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis