Browse Element(s) Details


Os.9698.1.S1_at

Description gb:AK106028.1
DB_XREF= gi:32991237
TID=Os.9698.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C12, full insert sequence.
FL= gb:AK106028.1 gb:AK058463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0278011/11amidase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02730Os.7618.1.S1_at11/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02730OsAffx.8934.1.S1_x_at1/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02754Os.14965.1.S1_at10/114+1041720..1058003Amidase family protein, expressed
LOC_Os04g02780Os.9698.1.S1_at11/114+1060492..1063545amidase family protein, putative, expressed
LOC_Os04g02790NANA4+1071751..1072062hypothetical protein
LOC_Os04g02800NANA4+1074546..1075067retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.49936.2.A1_at3/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.33601.3.S1_x_at1/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02820Os.28160.1.S1_at11/114+1080525..1085753Elongation factor 2, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_s_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9698.1.S1_at--862--3091Chr04:1062748..1062772 (25 bp)
AATACTGGAGGCCATTGCATCTGGG
LOC_Os04g02780
Os.9698.1.S1_at--748--5251Chr04:1062779..1062803 (25 bp)
GAATCCCTGGAGGATTTCCAAGCTA
LOC_Os04g02780
Os.9698.1.S1_at--228--851Chr04:1062969..1062993 (25 bp)
ATGGAATCCTTGCAATCCCTACAGT
LOC_Os04g02780
Os.9698.1.S1_at--580--8271Chr04:1063016..1063040 (25 bp)
GGCATGGAAGCTGCTCCTCTGGAAA
LOC_Os04g02780
Os.9698.1.S1_at--17--3111Chr04:1063040..1063064 (25 bp)
AATTTCCGAGCAAGAGCATTTTCAC
LOC_Os04g02780
Os.9698.1.S1_at--571--9491Chr04:1063068..1063092 (25 bp)
TCTCCATCGCTGGATTATCCGGGTT
LOC_Os04g02780
Os.9698.1.S1_at--1056--9651Chr04:1063308..1063332 (25 bp)
TCAGACACTCATAGACGAAGCCACT
LOC_Os04g02780
Os.9698.1.S1_at--115--9831Chr04:1063332..1063356 (25 bp)
TAAAACTTGGTCCTCCTGAATCCTG
LOC_Os04g02780
Os.9698.1.S1_at--1118--3031Chr04:1063350..1063374 (25 bp)
AATCCTGCCCTATTTCATCTGTATA
LOC_Os04g02780
Os.9698.1.S1_at--883--6471Chr04:1063430..1063454 (25 bp)
GATACTACAGTAGACTGCCCATGTA
LOC_Os04g02780
Os.9698.1.S1_at--300--2391Chr04:1063512..1063536 (25 bp)
AAACTTGTGCTTTACCAATGAGGTT
LOC_Os04g02780
Target Sequence 
AATACTGGAGGCCATTGCATCTGGGGATAATGAATCCCTGGAGGATTTCCAAGCTATAAGGGCTGAATTCAAGTCTGCAC
TTGCTGCTCTTCTGAAGGATCATGGAATCCTTGCAATCCCTACAGTTCCTGGGCCTCCACCCAAGGTGGGCATGGAAGCT
GCTCCTCTGGAAAATTTCCGAGCAAGAGCATTTTCACTTCTCTCCATCGCTGGATTATCCGGGTTTTGCCAGGTGAGTAT
TCCGCTGGGCATGCGCAATGGTCTTCCTGTGTCAGTTTCGCTCGTGGCGCGACATGGTGCAGACCATTTCCTCCTCAATG
TGGTTGAGGAGCTGTATCAGACACTCATAGACGAAGCCACTAAAACTTGGTCCTCCTGAATCCTGCCCTATTTCATCTGT
ATATGCCTAATACACAGTCAAAACACATNNNTTCATATGGAAATGGAGTGATACTGATACAGATACTACAGTAGACTGCC
CATGTAATTAACATTTGCATATGCATGNATGTTTGCACTGCACAGACAAAGTTCTTTGGGATAAAACTTGTGCTTTACCA
ATGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis