Browse Element(s) Details


Os.9707.1.S1_at

Description gb:AK101740.1
DB_XREF= gi:32986949
TID=Os.9707.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061L19, full insert sequence.
FL= gb:AK101740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0125010/11Amidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01220OsAffx.19542.3.S1_x_at5/114+155325..160215retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01230Os.7215.1.S1_at11/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01230OsAffx.25820.1.S1_s_at9/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01240Os.10283.1.S1_at11/114+173052..176937expressed protein
LOC_Os04g01250Os.9707.1.S1_at10/114+178337..187650Amidase family protein, expressed
LOC_Os04g01260NANA4+193734..195090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01270NANA4+198241..199027hypothetical protein
LOC_Os04g01280Os.53113.1.A1_at11/114+206674..209979Glycosyltransferase family 43 protein, expressed
LOC_Os04g01290Os.6368.1.S1_at11/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01290Os.10209.2.S1_at1/114+210308..213358PCI domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9707.1.S1_at--72--9611Chr04:181012..181033 (22 bp)
TCATAGCAACTCCTACAACTGGCAT
LOC_Os04g01250
Os.9707.1.S1_at--170--3171NONE
CAATTACGTTGTGTCAGCTTACCTG
NONE
Os.9707.1.S1_at--1072--3391Chr04:179544..179568 (25 bp)
CAGCTTACCTGATGCGATTCGTGAT
LOC_Os04g01250
Os.9707.1.S1_at--236--3051Chr04:179512..179536 (25 bp)
AATCTTCTTGGTTTGCCCGCGATAA
LOC_Os04g01250
Os.9707.1.S1_at--747--4211Chr04:179239..179520 (25 bp)
CCGCGATAACTGTACCTGTTGGTCA
LOC_Os04g01250
Os.9707.1.S1_at--777--2871Chr04:179206..179230 (25 bp)
AAGGGCTTCCTATAGGCTTGCAACT
LOC_Os04g01250
Os.9707.1.S1_at--779--10491Chr04:179150..179174 (25 bp)
TTAAGGGTGGCTTCTGCAATCGAGG
LOC_Os04g01250
Os.9707.1.S1_at--315--1631Chr04:178598..178622 (25 bp)
AGCGGAAACGGCCATCTGCATTTCA
LOC_Os04g01250
Os.9707.1.S1_at--757--671Chr04:178574..178598 (25 bp)
ATGACATCCTGAACGCTTGAGTTGA
LOC_Os04g01250
Os.9707.1.S1_at--1110--7771Chr04:178511..178535 (25 bp)
GGTGCTACGCTTTTATTCAGAACAT
LOC_Os04g01250
Os.9707.1.S1_at--124--6571Chr04:178471..178495 (25 bp)
GATTCAGTCTTTCCTGGTGTTGGAT
LOC_Os04g01250
Target Sequence 
TCATAGCAACTCCTACAACTGGCATCACTGCTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTT
GTGTCAGCTTACCTGATGCGATTCGTGATAGCTGGCAATCTTCTTGGTTTGCCCGCGATAACTGTACCTGTTGGTCATGA
TAAGCAAGGGCTTCCTATAGGCTTGCAACTGATAGGTCGACCATGGGGCGAGGCTAGCTTATTAAGGGTGGCTTCTGCAA
TCGAGGAGCTCTGTCTGNAGAAGCGGAAACGGCCATCTGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGT
ATCCATCCATCAATGATGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGTACAGTGCAGATGATTCAGTCTTT
CCTGGTGTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis