Browse Element(s) Details


Os.9722.1.S1_at

Description gb:AK072739.1
DB_XREF= gi:32982762
TID=Os.9722.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138C10, full insert sequence.
FL= gb:AK103913.1 gb:AK072739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3324011/11DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9722.1.S1_at--62--911Chr05:19406847..19406871 (25 bp)
AGGCTGGGCCTGTGCAGATCTTCGT
LOC_Os05g33240
Os.9722.1.S1_at--1125--1271Chr05:19406837..19406856 (20 bp)
AGATCTTCGTGTCCAACCATTTGAT
LOC_Os05g33240
Os.9722.1.S1_at--602--10371Chr05:19406455..19406478 (24 bp)
TTATACTACTTCTGATGGATCGGTG
LOC_Os05g33240
Os.9722.1.S1_at--840--2331Chr05:19405543..19405567 (25 bp)
AAAGATGACTTCCTGGGCGTTATCA
LOC_Os05g33240
Os.9722.1.S1_at--114--10431Chr05:19405524..19405548 (25 bp)
TTATCAGTGATCCTGGTGCGGCAGT
LOC_Os05g33240
Os.9722.1.S1_at--409--7771Chr05:19405488..19405512 (25 bp)
GGTGACAAGATTACGCCTCTTCATG
LOC_Os05g33240
Os.9722.1.S1_at--260--7671Chr05:19405392..19405416 (25 bp)
GGGTTGGAACCTGTATTTTCATCAC
LOC_Os05g33240
Os.9722.1.S1_at--1116--2951Chr05:19405363..19405387 (25 bp)
AATGGCGCTTTACCAAGTTGGCACT
LOC_Os05g33240
Os.9722.1.S1_at--458--7491Chr05:19405322..19405346 (25 bp)
GTGGGATTCAACTTTCAAGCAGTCA
LOC_Os05g33240
Os.9722.1.S1_at--524--3271Chr05:19405287..19405311 (25 bp)
CAAACTCTGACCTTTTTACGGACTG
LOC_Os05g33240
Os.9722.1.S1_at--809--9911Chr05:19405271..19405295 (25 bp)
TACGGACTGTACAATTTTGCACTGT
LOC_Os05g33240
Target Sequence 
AGGCTGGGCCTGTGCAGATCTTCGTGTCCAACCATTTGATTCCNGATGATATGGAGTTCCAATCTGGGGATGTGCCAAAT
TATACTACTTCTGATGGATCGGTGAAAATTCAGAAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTGTTGATGC
AACAGAAATTTTTTGCATTGGCACAATAAAAGATGACTTCCTGGGCGTTATCAGTGATCCTGGTGCGGCAGTGTAAATTA
TCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCC
ACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTT
GAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAATTTTGC
ACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis