Browse Element(s) Details


Os.9724.1.S1_at

Description gb:AK104714.1
DB_XREF= gi:32989923
TID=Os.9724.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H10, full insert sequence.
FL= gb:AK066587.1 gb:AK104714.1 gb:AK106150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1203011/11very-long-chain fatty acid condensing enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9724.1.S1_at--1055--1431Chr03:6282471..6282495 (25 bp)
AGAACCTGGACCTGTCCGCGCAGCA
LOC_Os03g12030
Os.9724.1.S1_at--453--4911Chr03:6282321..6282345 (25 bp)
GCTTCGGCAGCGGATTCAAGTGCAA
LOC_Os03g12030
Os.9724.1.S1_at--301--7191Chr03:6282289..6282313 (25 bp)
GTCTGGAAGTGCCTCCGCACAGTCA
LOC_Os03g12030
Os.9724.1.S1_at--171--5331Chr03:6282284..6282308 (25 bp)
GAAGTGCCTCCGCACAGTCAAGACG
LOC_Os03g12030
Os.9724.1.S1_at--570--2091Chr03:6282213..6282237 (25 bp)
ACATCCCGGAGGTCGTCAAGCTGTG
LOC_Os03g12030
Os.9724.1.S1_at--1083--4251Chr03:6282208..6282232 (25 bp)
CCGGAGGTCGTCAAGCTGTGATCGA
LOC_Os03g12030
Os.9724.1.S1_at--389--3871Chr03:6282193..6282217 (25 bp)
CTGTGATCGAATCCATGGTAGCCTC
LOC_Os03g12030
Os.9724.1.S1_at--952--511Chr03:6282188..6282212 (25 bp)
ATCGAATCCATGGTAGCCTCAGCCT
LOC_Os03g12030
Os.9724.1.S1_at--285--5411Chr03:6282099..6282123 (25 bp)
GAAGCGTGCGTCCTCAAACTTTGGA
LOC_Os03g12030
Os.9724.1.S1_at--21--7271Chr03:6282090..6282114 (25 bp)
GTCCTCAAACTTTGGAGCTTCTTAA
LOC_Os03g12030
Os.9724.1.S1_at--881--10591Chr03:6281984..6282008 (25 bp)
TTCGCTATAAACACGGATTAAATCG
LOC_Os03g12030
Target Sequence 
AGAACCTGGACCTGTCCGCGCAGCACGTGGAGGCGTCCCGCATGACGCTGCACCGGTTCGGCAACACGTCGAGCAGCTCG
CTCTGGTACGAGCTCGCCTACATCGAGGCCAAGGGGCGCATGCGCCGCGGCGACCGCGTCTGGCAGATCGGCTTCGGCAG
CGGATTCAAGTGCAACAGCGCCGTCTGGAAGTGCCTCCGCACAGTCAAGACGCCCGCCGACGGGCCGTGGGACGACTGCA
TCCACCGCTACCCCGTCGACATCCCGGAGGTCGTCAAGCTGTGATCGAATCCATGGTAGCCTCAGCCTCGCCCTCGCCGG
CGGCCGTCGCGCCGCCGCCGCATTACCTCCCCTACACCTGTACGTCACCCGCGAAGCGTGCGTCCTCAAACTTTGGAGCT
TCTTAATTTGTGGTGTTTTCTTCTTTCCTCCTTTCCCCTCCCTCGCTTCTTAATTTTTTTTCTTGTCTTCCTTTTATTTT
TATTTTTTTCGCTATAAACACGGATTAAATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis