Browse Element(s) Details


Os.9749.1.S1_at

Description gb:AK102459.1
DB_XREF= gi:32987668
TID=Os.9749.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for monodehydroascorbate reductase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094C01, full insert sequence.
FL= gb:AK102459.1 gb:AK059351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4434011/11Monodehydroascorbate reductase, putative, expressed
LOC_Os09g137801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9749.1.S1_at--537--991Chr08:27769751..27769775 (25 bp)
AGGATGTGCTGTTCGGCGACAACGA
LOC_Os08g44340
Os.9749.1.S1_at--72--951Chr08:27769931..27769955 (25 bp)
AGGAAGGACTCGACTTCGCTGCCAA
LOC_Os08g44340
Os.9749.1.S1_at--212--2332Chr09:8070073..8070111 (24 bp)
AAAGTCTGAACCTCTCTATGCACAC
LOC_Os09g13780
Os.9749.1.S1_at--227--9031Chr08:27769972..27769996 (25 bp)
TGCACACGCATTTCATTTTGTGGAC
LOC_Os08g44340
Os.9749.1.S1_at--1139--10391Chr08:27769987..27770011 (25 bp)
TTTTGTGGACGCTGTGATGCTGCCA
LOC_Os08g44340
Os.9749.1.S1_at--716--1111Chr08:27770034..27770058 (25 bp)
AGTGATTTTGTTAGCTCCGATCCTA
LOC_Os08g44340
Os.9749.1.S1_at--298--751Chr08:27770098..27770122 (25 bp)
ATGTAGTCACTGTGGCGAGGTCCCA
LOC_Os08g44340
Os.9749.1.S1_at--1104--7791Chr08:27770116..27770140 (25 bp)
GGTCCCAATAATGTCTGTACTCTGT
LOC_Os08g44340
Os.9749.1.S1_at--446--7011Chr08:27770132..27770156 (25 bp)
GTACTCTGTAGCTTCTGTGATTGGT
LOC_Os08g44340
Os.9749.1.S1_at--422--2631Chr08:27770174..27770198 (25 bp)
AACCTGTGTATCGTCTGTGTTTCTT
LOC_Os08g44340
Os.9749.1.S1_at--1083--891Chr08:27770217..27770241 (25 bp)
AGGCTGTTCTTTGCTAGTTACTTAA
LOC_Os08g44340
Target Sequence 
AGGATGTGCTGTTCGGCGACAACGACCCCACGGCGGCCAAGCCCAAGTTCGGCTCGTACTGGATCAAGGACGGCAAGGTC
GTCGGCGTCTTCCTCGAGGGCGGCTCGGCGGAGGAGAATCAGGTCATTGCCAAGGTCGCCAGAGCTCAGCCGCCGGTGGC
CGACGTCGAGGCTCTCAAGAAGGAAGGACTCGACTTCGCTGCCAAAGTCTGAACCTCTCTATGCACACGCATTTCATTTT
GTGGACGCTGTGATGCTGCCATCTTTTCGATTNTGAGCTTCGTAGTGATTTTGTTAGCTCCGATCCTATATATGGAGGAT
TTGTTTTGTTCTCATTGTGAATTTGTGATGTAGTCACTGTGGCGAGGTCCCAATAATGTCTGTACTCTGTAGCTTCTGTG
ATTGGTTGTTTTCTTTTTAAAAAAACCTGTGTATCGTCTGTGTTTCTTTTTTTTTTATCACGGATTAGGCTGTTCTTTGC
TAGTTACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis