Browse Element(s) Details


Os.9762.1.S1_at

Description gb:AK065444.1
DB_XREF= gi:32975462
TID=Os.9762.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013009A19, full insert sequence.
FL= gb:AK065444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g152791/11hypothetical protein
LOC_Os03g333801/11hypothetical protein
LOC_Os04g179801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15240Os.46436.1.S1_at10/1110+7745906..7749861hypothetical protein
LOC_Os10g15250OsAffx.16111.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.19776.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.22699.1.S1_x_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15260OsAffx.8332.1.S1_at10/1110+7761095..7762097hypothetical protein
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein
LOC_Os10g15310Os.11953.1.S1_at8/1110+7788439..7790310hypothetical protein
LOC_Os10g15310OsAffx.24767.1.S1_x_at1/1110+7788439..7790310hypothetical protein
LOC_Os10g15320OsAffx.18258.1.S1_at11/1110+7791909..7792637hypothetical protein
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9762.1.S1_at--478--10352Chr10:7773615..7773634 (20 bp)
TTTATTTCTAATGATTTCCACCAGT
LOC_Os10g15279
Os.9762.1.S1_at--441--553Chr08:11284430..11284449 (20 bp)
ATCCCGCTGGAGTCCATGGAGTGAT
NONE
Os.9762.1.S1_at--894--6114Chr08:11284443..11284787 (25 bp)
GAGTGATGAGCCCACAAACTATATT
NONE
Os.9762.1.S1_at--6--2274Chr10:12336554..12336578 (25 bp)
AAATCATTATTTATTGGGCCAACGC
NONE
Os.9762.1.S1_at--612--3473Chr08:16119922..16119946 (25 bp)
CAGGGTTGCTCCCTAATGACGGTTG
NONE
Os.9762.1.S1_at--237--1091Chr08:16119896..16119920 (25 bp)
AGGGCGTTTAGGACATTTCTCATAG
NONE
Os.9762.1.S1_at--123--194Chr07:12461770..12461793 (24 bp)
ATTTCTCATAGCTGTAACCGTCATA
NONE
Os.9762.1.S1_at--152--351Chr08:16119849..16119873 (25 bp)
ATAAATAGAGCTCCTCTCTCTCACT
NONE
Os.9762.1.S1_at--911--6193Chr03:19040582..19040796 (25 bp)
GAGGAATCCCGAAGTTGTCATTAAT
LOC_Os03g33380
Os.9762.1.S1_at--507--10791Chr08:16119716..16119740 (25 bp)
TTGTCATTAATCTCCTTCTACTCTT
NONE
Os.9762.1.S1_at--845--3811Chr08:16119705..16119729 (25 bp)
CTCCTTCTACTCTTGTATCTTGTTA
NONE
Target Sequence 
TTTATTTCTAATGATTTCCACCAGTGTTGGTGTATATTTGTATGCAGGTGACAAACTACTAAAGTTGAGAGGAAATAAAC
ATATAGGGAGGGGAATTATACATCCCGCTGGAGTCCATGGAGTGATGAGCCCACAAACTATATTAAATCATTATTTATTG
GGCCAACGCTAGAAGAATAATAAAGTGGGACCCAAATGTCAAGAAATAAAAGAAGGCCGGAGACGGTTGGGCCAGCCCAT
GGTTCGGCCGAACCGCCACAAAGCCCAATTCATCCCAGCCTTCCACATGGACGTCCAGGGTTGCTCCCTAATGACGGTTG
GAGGGCGTTTAGGACATTTCTCATAGCTGTAACCGTCATATGAAGCCTATAAATAGAGCTCCTCTCTCTCACTTCACTCA
CACACCAAAGCATGAGCTGAATTACAAGAGGCTCTAGTGTACTTTATTGTATATTAGAAAAGAGAGAGAGTAAGGTAGAA
GGAATCAGAGGAATCCCGAAGTTGTCATTAATCTCCTTCTACTCTTGTATCTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis