Browse Element(s) Details


Os.9768.1.S1_a_at

Description gb:AK069427.1
DB_XREF= gi:32979451
TID=Os.9768.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019L08, full insert sequence.
FL= gb:AK069427.1 gb:AK119352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5741011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
LOC_Os02g57380Os.54214.1.S1_at11/112+35153098..35155675Thioredoxin-like 8, chloroplast precursor, putative, expressed
LOC_Os02g57390Os.5424.1.S1_at11/112+35157621..35162467Pumilio/Mpt5 family RNA-binding protein, putative, expressed
LOC_Os02g57400Os.11176.1.S1_at11/112+35164546..351693852-phosphoglycerate kinase, putative, expressed
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9768.1.S1_a_at--796--7711Chr02:35174287..35174311 (25 bp)
GGGTGACCATGTGACTCTACAGGCT
LOC_Os02g57410
Os.9768.1.S1_a_at--900--5711Chr02:35174275..35174299 (25 bp)
GACTCTACAGGCTGCTGCTGACAAG
LOC_Os02g57410
Os.9768.1.S1_a_at--99--5671Chr02:35174108..35174132 (25 bp)
GACATCGTTCAAGGATACGTGCTAC
LOC_Os02g57410
Os.9768.1.S1_a_at--175--1531Chr02:35173935..35173959 (25 bp)
AGCTTTTGGGCGGAGGTTCACTACA
LOC_Os02g57410
Os.9768.1.S1_a_at--651--7891Chr02:35173921..35173945 (25 bp)
GGTTCACTACAACTCCATATATCCG
LOC_Os02g57410
Os.9768.1.S1_a_at--468--1331Chr02:35173705..35173729 (25 bp)
AGAGGAGATGGTGGCCGTTCTCTCA
LOC_Os02g57410
Os.9768.1.S1_a_at--750--391Chr02:35173669..35173693 (25 bp)
ATCACCACCATTGATGCCTGGGCTG
LOC_Os02g57410
Os.9768.1.S1_a_at--823--8331Chr02:35173649..35173673 (25 bp)
GGCTGCAAAGCTTTTCTTCCTTGAT
LOC_Os02g57410
Os.9768.1.S1_a_at--684--7791Chr02:35173435..35173459 (25 bp)
GGTCCGGTCCCGTATATAGCTGCTG
LOC_Os02g57410
Os.9768.1.S1_a_at--576--9031Chr02:35173399..35173423 (25 bp)
TGCACTGCATTGCATTCCCTGAATC
LOC_Os02g57410
Os.9768.1.S1_a_at--948--5231Chr02:35173379..35173403 (25 bp)
GAATCAATTATCAATCACCTCACCT
LOC_Os02g57410
Target Sequence 
GGGTGACCATGTGACTCTACAGGCTGCTGCTGACAAGTATGGAGTTAAGATTTTCGTGATGACATCGTTCAAGGATACGT
GCTACATTGAGATCCAACCAAAGGTTCAGAAGTCCAACAAAGTGGTGCTGTTGAGCTTTTGGGCGGAGGTTCACTACAAC
TCCATATATCCGCAGAACGATGCGCCGAGGTCGCAGACGACGAGGAAGAGGAGATGGTGGCCGTTCTCTCACAACCACCA
CCATCACCACCATTGATGCCTGGGCTGCAAAGCTTTTCTTCCTTGATCAAGATGACCCAGGTTGATCAAGATGACCCAGA
AAGAAAGCTGGTGCTCATNGTCTTGTTGGTCTGATGACAATCATGGACATCTGATAGTAGGAGGAGGACATTGTGGTGAT
GATTATATATCTCCAAATGATATAGAAGATACATGGAAATATGGAATCCATGGAAGGAATAATTTCGTCTTAGTCCGGTC
CGGTCCCGTATATAGCTGCTGCTGAGCTGCACTGCACTGCATTGCATTCCCTGAATCAATTATCAATCACCTCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9768.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis