Browse Element(s) Details


Os.9768.1.S2_at

Description gb:AK119352.1
DB_XREF= gi:37988975
TID=Os.9768.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F04, full insert sequence.
FL= gb:AK069427.1 gb:AK119352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5741011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
LOC_Os02g57380Os.54214.1.S1_at11/112+35153098..35155675Thioredoxin-like 8, chloroplast precursor, putative, expressed
LOC_Os02g57390Os.5424.1.S1_at11/112+35157621..35162467Pumilio/Mpt5 family RNA-binding protein, putative, expressed
LOC_Os02g57400Os.11176.1.S1_at11/112+35164546..351693852-phosphoglycerate kinase, putative, expressed
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9768.1.S2_at--396--3231Chr02:35172936..35172960 (25 bp)
CAAGTTGTCATTCCCTGTGTTTGAA
LOC_Os02g57410
Os.9768.1.S2_at--951--2011Chr02:35172912..35172936 (25 bp)
ACTCAAGTTGATTTCCTGTTCTGAA
LOC_Os02g57410
Os.9768.1.S2_at--235--8971Chr02:35172883..35172907 (25 bp)
TGAACATTTGTTGCTCCCTTAACTG
LOC_Os02g57410
Os.9768.1.S2_at--627--6511Chr02:35172847..35172871 (25 bp)
GATATATGCTCTACCAGCACAGTGT
LOC_Os02g57410
Os.9768.1.S2_at--242--3071Chr02:35172812..35172836 (25 bp)
AATAAGGTCTCTGTACCCATCTGAG
LOC_Os02g57410
Os.9768.1.S2_at--943--6451Chr02:35172764..35172788 (25 bp)
GATCAAGCTATTACTCCAAAGTCCA
LOC_Os02g57410
Os.9768.1.S2_at--701--1971Chr02:35172624..35172648 (25 bp)
ACTGCATGGTCAAGGGTTACGTACT
LOC_Os02g57410
Os.9768.1.S2_at--230--6671Chr02:35172609..35172633 (25 bp)
GTTACGTACTACTCTTATCCAATCA
LOC_Os02g57410
Os.9768.1.S2_at--899--6311Chr02:35172582..35172606 (25 bp)
GATGAACATGTTAGCCTATCTGTAA
LOC_Os02g57410
Os.9768.1.S2_at--332--4211Chr02:35172445..35172469 (25 bp)
CCGACCATCCTACTAGTCTTTGTAT
LOC_Os02g57410
Os.9768.1.S2_at--356--7151Chr02:35172430..35172454 (25 bp)
GTCTTTGTATATCTCTGCTCTACTT
LOC_Os02g57410
Target Sequence 
CAAGTTGTCATTCCCTGTGTTTGAACTCAAGTTGATTTCCTGTTCTGAAATTCTGAACATTTGTTGCTCCCTTAACTGTA
GCAGCAGGTGATATATGCTCTACCAGCACAGTGTGATCACAACTAATAAGGTCTCTGTACCCATCTGAGATAGACAAGAG
AGGAGAAAAAAAGATCAAGCTATTACTCCAAAGTCCAAACTCTTTGTTTTCTCATCTGAAAAGAAAAGAACAACCTTTCG
TTTTCTGAAGGGGCTGCTCTTCTGTAGAGAGGTCGGCAAGGACTAGGAGGTAGAGGAGTAGTACAATGTTGAACTGCATG
GTCAAGGGTTACGTACTACTCTTATCCAATCACAGATGAACATGTTAGCCTATCTGTAATATAATCTTCCTATTGATAAT
TGATTTCTGAATAAATGAACGTGTGAAGCAGGCAGTTTGAATGTTGAAATGGTCGGTCAGTCAGTTCAGGCACCGTCACC
GCTCTTGTAGACCGACCATCCTACTAGTCTTTGTATATCTCTGCTCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9768.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis