Browse Element(s) Details

Os.9832.1.S1_at

Description

gb:AK073428.1
DB_XREF= gi:32983451
TID=Os.9832.1
CNT=83
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042H02, full insert sequence.
FL= gb:AK101315.1 gb:AK073428.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g42720	11/11	amino acid transporter family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g42670	Os.47463.1.S1_x_at	5/11	6	+	25663338..25664677	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42670	Os.14491.2.S1_x_at	3/11	6	+	25663338..25664677	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42680	Os.3434.1.S1_a_at	11/11	6	+	25669037..25670898	Phytosulfokines 1 precursor, putative, expressed
LOC_Os06g42690	NA	NA	6	+	25675969..25676493	bZIP transcription factor family protein, expressed
LOC_Os06g42700	OsAffx.15898.1.S1_s_at	11/11	6	+	25679949..25681202	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42700	Os.15524.1.S1_at	10/11	6	+	25679949..25681202	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42710	OsAffx.2625.1.S1_at	6/11	6	+	25683526..25687067	transposon protein, putative, Mutator sub-class
LOC_Os06g42720	Os.9832.1.S1_at	11/11	6	+	25689382..25692908	amino acid transporter family protein, putative, expressed
LOC_Os06g42730	OsAffx.28068.1.S1_at	11/11	6	+	25697744..25701600	expressed protein
LOC_Os06g42730	OsAffx.28068.1.S1_x_at	11/11	6	+	25697744..25701600	expressed protein
LOC_Os06g42730	Os.23051.1.A1_at	5/11	6	+	25697744..25701600	expressed protein
LOC_Os06g42740	OsAffx.15899.1.S1_at	11/11	6	+	25703044..25704021	hypothetical protein
LOC_Os06g42754	Os.53625.1.S1_at	11/11	6	+	25707680..25709722	expressed protein
LOC_Os06g42770	Os.53688.1.S1_at	11/11	6	+	25710871..25713681	Type II intron maturase family protein, expressed
LOC_Os06g42780	OsAffx.28069.1.S1_at	11/11	6	+	25714154..25714941	hypothetical protein
LOC_Os06g42790	Os.20757.1.S1_a_at	11/11	6	+	25717155..25721142	Nudix hydrolase 2, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006865	biological_process	amino acid transport
GO:0016020	cellular_component	membrane
GO:0005279	molecular_function	amino acid-polyamine transporter activity
GO:0015359	molecular_function	amino acid permease activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9832.1.S1_at--1073--873	1	Chr06:25692311..25692335 (25 bp)	TGTAACCATGATCGTGCTTGCTGTC	LOC_Os06g42720
Os.9832.1.S1_at--758--429	1	Chr06:25692335..25692359 (25 bp)	CCTCTCCAATTCTGTTGCTTTATAC	LOC_Os06g42720
Os.9832.1.S1_at--1100--163	1	Chr06:25692360..25692384 (25 bp)	AGCGATGCAATGAATATCTTCCGTA	LOC_Os06g42720
Os.9832.1.S1_at--525--619	1	Chr06:25692393..25692417 (25 bp)	GAGGCATGAATGTCAGACTCCAAAG	LOC_Os06g42720
Os.9832.1.S1_at--876--267	1	Chr06:25692446..25692470 (25 bp)	AAGCGTGGCTTCATGTTATGAGACA	LOC_Os06g42720
Os.9832.1.S1_at--14--625	1	Chr06:25692561..25692585 (25 bp)	GATGGTTGAATCTGCGTGGCTTCTG	LOC_Os06g42720
Os.9832.1.S1_at--607--849	1	Chr06:25692577..25692601 (25 bp)	TGGCTTCTGTGCGAACCGGCTCAAA	LOC_Os06g42720
Os.9832.1.S1_at--480--73	1	Chr06:25692662..25692686 (25 bp)	ATGGCTTTAAAATGCCTGGTTTACA	LOC_Os06g42720
Os.9832.1.S1_at--516--955	1	Chr06:25692782..25692806 (25 bp)	TCTTTCGGACTTTCACTTGTGTGTC	LOC_Os06g42720
Os.9832.1.S1_at--1136--1083	1	Chr06:25692798..25692822 (25 bp)	TTGTGTGTCAAGTCTCTGCATGTTT	LOC_Os06g42720
Os.9832.1.S1_at--114--553	1	Chr06:25692857..25692881 (25 bp)	GAAAAACTCTGGTTTCCAATGATGT	LOC_Os06g42720

Target Sequence

TGTAACCATGATCGTGCTTGCTGTCCTCTCCAATTCTGTTGCTTTATACAGCGATGCAATGAATATCTTCCGTAAGGAAG
AGGAGGCATGAATGTCAGACTCCAAAGGAATGTCATCAAATATCAGTGATGAAGGAAGCGTGGCTTCATGTTATGAGACA
CAGATGCTGTGAAGGGAAATTATTTCCTGGAATCCAGCNAACGAAGATTTCTTGGTCAGCGGTCGAGGTTCCAGTCACTC
GAATGAATTGGATGGTTGAATCTGCGTGGCTTCTGTGCGAACCGGCTCAAATTCGAATTGAGCTGCTCGCGATATCTGTA
TTGTTAGTGTTCTTGTATCCACAAGCAATGTATGGCTTTAAAATGCCTGGTTTACAATAATGTACAGTTTCAAAAATACT
TCAGATGAGTTAAATGTCTATGTGAACCTGGACTCANTGTCGATTTAAAATTGGAATGGCTGTTGTTGCCATCTTTCGGA
CTTTCACTTGTGTGTCAAGTCTCTGCATGTTTGAATTAAGGCANTATGAGAATTTAATTTACNTTTGAAAAACTCTGGTT
TCCAATGATGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis