Browse Element(s) Details


Os.9838.1.S1_at

Description gb:AK060831.1
DB_XREF= gi:32970849
TID=Os.9838.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C05, full insert sequence.
FL= gb:AK060831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0776011/11Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9838.1.S1_at--774--2311Chr02:4051500..4051524 (25 bp)
AAAGAGCATACCTCGTTCATGGCGC
LOC_Os02g07760
Os.9838.1.S1_at--38--8411Chr02:4051520..4051544 (25 bp)
GGCGCGTTTCGGAAGCTCTTGAATA
LOC_Os02g07760
Os.9838.1.S1_at--652--4011Chr02:4051690..4051714 (25 bp)
CGTTTGGCGGCGTCAAGCAATCTGG
LOC_Os02g07760
Os.9838.1.S1_at--23--10271Chr02:4051864..4051888 (25 bp)
TTTGCATGGGAAACCTGAACTGATC
LOC_Os02g07760
Os.9838.1.S1_at--32--3331Chr02:4051889..4051913 (25 bp)
CACTTGAGAGTACCGTGCGTCTTAA
LOC_Os02g07760
Os.9838.1.S1_at--804--6791Chr02:4051907..4051931 (25 bp)
GTCTTAAAACCGAAGTACCTGGCTG
LOC_Os02g07760
Os.9838.1.S1_at--261--1371Chr02:4051975..4051999 (25 bp)
AGAGCACTGAGGCTACTTGCACCTG
LOC_Os02g07760
Os.9838.1.S1_at--1032--2311Chr02:4052084..4052108 (25 bp)
AAAGTTCCCCAATGAGTTGTACATG
LOC_Os02g07760
Os.9838.1.S1_at--179--7051Chr02:4052118..4052142 (25 bp)
GTAAAGCACGGCTTCATCTCCGAGC
LOC_Os02g07760
Os.9838.1.S1_at--40--451Chr02:4052133..4052157 (25 bp)
ATCTCCGAGCTTTGTTTGGTACTAG
LOC_Os02g07760
Os.9838.1.S1_at--345--251Chr02:4052186..4052210 (25 bp)
ATATCAGTAGTGTCCATGTCCAAAG
LOC_Os02g07760
Target Sequence 
AAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCNA
CAGAGGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCAAAATACGGCATGGACGAGTACCTG
GAGCTCAAGTACATTTGCATGGGAAACCTGAACTGATCCACTTGAGAGTACCGTGCGTCTTAAAACCGAAGTACCTGGCT
GGTGATGAATCGAAGCCGGGGGCAAGAGTAGCTGCAAGAACTGAAGAGCACTGAGGCTACTTGCACCTGCAGGACAGGTT
AGAAACTTAGAATAATAATAAGAAGAAATAATAAAAATAAAGTGGAGTAAGCTAAGCCAGGGAGCCGGAATAAAAAGTTC
CCCAATGAGTTGTACATGATGTGAACCGTAAAGCACGGCTTCATCTCCGAGCTTTGTTTGGTACTAGTACTACCTGAGAA
ATCATCACGCTACTNATATCAGTAGTGTCCATGTCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis