Browse Element(s) Details


Os.9883.2.S1_at

Description gb:C24964
DB_XREF= gi:2275987
DB_XREF=C24964
CLONE=S16428_3A
TID=Os.9883.2
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9883 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47624 (A.thaliana) T47624 hypothetical protein T5N23.10 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4339011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43350OsAffx.25511.1.S1_at11/113+24123273..24125821hypothetical protein
LOC_Os03g43360OsAffx.13323.1.S1_at11/113+24128721..24134539Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g43374NANA3+24138620..24139265retrotransposon protein, putative, unclassified
LOC_Os03g43390Os.9883.2.S1_at11/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390Os.9883.1.A1_at10/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390OsAffx.7847.1.S1_at1/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43400OsAffx.25512.1.S1_s_at10/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43400OsAffx.25512.1.S1_x_at8/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43410Os.9945.1.S1_at11/113+24166753..24168059AUX/IAA family protein, expressed
LOC_Os03g43420Os.6868.1.S1_at11/113+24169440..24173638single-strand binding protein, expressed
LOC_Os03g43430Os.12861.1.S1_at8/113+24174236..24176470twin-arginine translocation protein, TatA/E family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9883.2.S1_at--525--471Chr03:24147770..24147794 (25 bp)
ATCTGCTCAGTTATCCAATGAAGCT
LOC_Os03g43390
Os.9883.2.S1_at--685--7591Chr03:24147958..24147982 (25 bp)
GGGCTTGTGCATGCTATCATTGATT
LOC_Os03g43390
Os.9883.2.S1_at--107--3691Chr03:24148017..24148041 (25 bp)
CTATTGTTCGATCTTGTGCAAGCTT
LOC_Os03g43390
Os.9883.2.S1_at--620--911Chr03:24148227..24148251 (25 bp)
AGGCATTTCCTCATACTTTATCAAG
LOC_Os03g43390
Os.9883.2.S1_at--84--3771Chr03:24148263..24148287 (25 bp)
CTCTTTGCCCAAATGTGACGACGTG
LOC_Os03g43390
Os.9883.2.S1_at--776--5751Chr03:24148282..24148415 (25 bp)
GACGTGTGGGATCCAATTTGCAACA
LOC_Os03g43390
Os.9883.2.S1_at--342--2492Chr11:10458992..10459423 (25 bp)
AACAGCACAATTACCACTTCTTCAG
NONE
Os.9883.2.S1_at--463--5271Chr03:24148450..24148474 (25 bp)
GAATGACCTTATGTGCTAGTTTGCA
LOC_Os03g43390
Os.9883.2.S1_at--975--2571Chr03:24148509..24148533 (25 bp)
AACGGTGCCATTAGATTTTGTCCAA
LOC_Os03g43390
Os.9883.2.S1_at--604--10251Chr03:24148525..24148549 (25 bp)
TTTGTCCAAAATTGCCCACCTCGAA
LOC_Os03g43390
Os.9883.2.S1_at--435--711Chr03:24148737..24148761 (25 bp)
ATGATCTAAACCTCAACTCCTGTAC
LOC_Os03g43390
Target Sequence 
ATCTGCTCAGTTATCCAATGAAGCTGTGTTTGCTCTGGAGGGTGCTAGCCTCAGGGGCTTGTGCATGCTATCATTGATTC
TAGGGTCAAAAATAACAGATGCAGCTGTTGCATCTATTGTTCGATCTTGTGCAAGCTTGGAATTGCTTGATTTAAGCGGA
TCTAGTATCAGTGATAATGGTGTCGGGATGATCTGCAAGGCATTTCCTCATACTTTATCAAGGCTACTCCTTGCTCTTTG
CCCAAATGTGACGACGTGTGGGATCCAATTTGCAACAGCACAATTACCACTTCTTCAGCTAATGGACTGTGGAATGACCT
TATGTGCTAGTTTGCAGAATGAAAAACAGGGGCCTTATTTTGGTGANATTAACGGTGCCATTAGATTTTGTCCAAAATTG
CCCACCTCGAANAAACAGTCTACTAACCAAAAGCTTATCATTAAGCATGGCAATCTGAAGAAGCTCAGTCTATGGGGCTG
CTCNNCAATNNNTGCTCTATATCTAAATTGTCCNNNNNTNAATGATCTAAACCTCAACTCCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9883.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis