Browse Element(s) Details


Os.9892.2.S1_at

Description gb:AK101399.1
DB_XREF= gi:32986608
TID=Os.9892.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037E13, full insert sequence.
FL= gb:AK101399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6546011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein
LOC_Os01g65460Os.9892.1.S1_a_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.9892.2.S1_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.42688.1.S1_x_at9/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed
LOC_Os01g65490Os.32122.1.S1_x_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.1.S1_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.2.S1_at1/111+38339648..38341148expressed protein
LOC_Os01g65500NANA1+38344981..38348540Chloride channel protein CLC-c, putative
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9892.2.S1_at--43--6511Chr01:38327884..38327908 (25 bp)
GATATGTAGACACCAGATCGCACTG
LOC_Os01g65460
Os.9892.2.S1_at--1161--6571Chr01:38327922..38327946 (25 bp)
GATTGCTCTCTTCATGTTGTGTCGC
LOC_Os01g65460
Os.9892.2.S1_at--1123--7451Chr01:38327940..38327964 (25 bp)
GTGTCGCGTCATGATATTTCTGGAT
LOC_Os01g65460
Os.9892.2.S1_at--257--7091Chr01:38328002..38328026 (25 bp)
GTCAACACAGTAGTTCATCTCTCGT
LOC_Os01g65460
Os.9892.2.S1_at--812--351Chr01:38328046..38328070 (25 bp)
ATAAGTTGCTCACTGTGCGGGTACT
LOC_Os01g65460
Os.9892.2.S1_at--731--5551Chr01:38328099..38328123 (25 bp)
GAAACCACTAGCTTGTGGCTCCATT
LOC_Os01g65460
Os.9892.2.S1_at--337--4791Chr01:38328116..38328140 (25 bp)
GCTCCATTGGCCGTAGATTCTGGAT
LOC_Os01g65460
Os.9892.2.S1_at--34--7071Chr01:38328149..38328173 (25 bp)
GTAAGATCTGCATTCCATTCCATGG
LOC_Os01g65460
Os.9892.2.S1_at--587--8551Chr01:38328237..38328261 (25 bp)
TGGATGCCGCTTCATGTTTTCCTTG
LOC_Os01g65460
Os.9892.2.S1_at--322--7571Chr01:38328281..38328305 (25 bp)
GGGCCCTCGAATTAAGTCCTAATCA
LOC_Os01g65460
Os.9892.2.S1_at--1067--9531Chr01:38328336..38328360 (25 bp)
TCTTCCGTAGTGGTTTCATGACTCC
LOC_Os01g65460
Target Sequence 
GATATGTAGACACCAGATCGCACTGGAGAAAGTTCTTGGATTGCTCTCTTCATGTTGTGTCGCGTCATGATATTTCTGGA
TTAACCTGTGAATGAATCTATGGTTGAGGCAGCAGGTGGTCAACACAGTAGTTCATCTCTCGTTATGATTGGGGAGACAA
AAATAAGTTGCTCACTGTGCGGGTACTGTGATGTTGCTAAGATCACAGTGCGGAAGAAACCACTAGCTTGTGGCTCCATT
GGCCGTAGATTCTGGATAAGATTAAGTAAGATCTGCATTCCATTCCATGGCGTACGGAATGGATGTTATTAAATCTTTGA
TTAGCCATGGATTAAGGAGCCGGGGCCTTTGACTGGATGCCGCTTCATGTTTTCCTTGTCATGTGAGTATTATTTAGGGG
CCCTCGAATTAAGTCCTAATCACCCACAGCCTGTTCCCTTCCTCTTCTCCCTTCTTCCGTAGTGGTTTCATGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9892.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis