Browse Element(s) Details


Os.9896.1.S1_at

Description gb:AK099921.1
DB_XREF= gi:32985130
TID=Os.9896.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116L24, full insert sequence.
FL= gb:AK099921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6737010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9896.1.S1_at--1014--5251Chr01:39457157..39457181 (25 bp)
GAATGCTTTTCCCTCGTCGTAAGAA
LOC_Os01g67370
Os.9896.1.S1_at--1148--571Chr01:39457045..39457069 (25 bp)
ATCCAATCTGATGCGAATTCGTTAG
LOC_Os01g67370
Os.9896.1.S1_at--898--6031Chr01:39457021..39457045 (25 bp)
GAGATACTGCAAATCTGCCGACTAT
LOC_Os01g67370
Os.9896.1.S1_at--221--2291Chr01:39456994..39457018 (25 bp)
AAATGACCTCATTTCCTGAAGAGTT
LOC_Os01g67370
Os.9896.1.S1_at--23--9691Chr01:39456907..39456931 (25 bp)
TCACCCATGGTTTCTTGCAAGCAAA
LOC_Os01g67370
Os.9896.1.S1_at--796--6331Chr01:39456847..39456871 (25 bp)
GATGCTAGCATCAATCCGCAACTGA
LOC_Os01g67370
Os.9896.1.S1_at--549--2411Chr01:39456821..39456845 (25 bp)
AAAAAGTTTCATCAGCCACCCATAA
LOC_Os01g67370
Os.9896.1.S1_at--111--9791Chr01:39456749..39456773 (25 bp)
TAAGATCTCTTTGGCCTGTAATAAT
LOC_Os01g67370
Os.9896.1.S1_at--629--7071Chr01:39456732..39456756 (25 bp)
GTAATAATCTCTCCATTTCCTATCA
LOC_Os01g67370
Os.9896.1.S1_at--817--2851Chr01:39456611..39456635 (25 bp)
AAGTGACATTCTCCTTTCTTGACAG
LOC_Os01g67370
Os.9896.1.S1_at--839--3991Chr01:39456585..39456609 (25 bp)
CGTGCGTGCTTGGTCATGAGTATTA
NONE
Target Sequence 
GAATGCTTTTCCCTCGTCGTAAGAACGTGAAACCTTCTACTGAAGANNAANNNNAACCTATCAAAACCTGGTTAGGACAC
AAGAGAGTAAANNNANNNANCATAAGANGTGCATCCAATCTGATGCGAATTCGTTAGAGATACTGCAAATCTGCCGACTA
TGAAAATGACCTCATTTCCTGAAGAGTTAGATAACTTTGATCCAGGTTTTGATCTGATTGNNGAAAGAAAAAAGAGAAAA
GAAAGAAGGATCACCCATGGTTTCTTGCAAGCAAAGTGGTGGTCTTGTAAAGGTGAAAGAAGTGAAGTAAGATGCTAGCA
TCAATCCGCAACTGACAAAAAGTTTCATCAGCCACCCATAAATTTGTCATCAAANAAAAAAAATAAACTGTAAAACAGGC
CAGATTAATAAGATCTCTTTGGCCTGTAATAATCTCTCCATTTCCTATCAACCTGTAACTAATTTAACTGCCATTTTTCC
CCCNTCATGCCTGAATAAAATGCAACTCCAATGTAAATCCACTGAGAAATCCTGATGTTTTCTGACAAGTGACATTCTCC
TTTCTTGACAGGCGTGCGTGCTTGGTCATGAGTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis