Browse Element(s) Details


Os.9948.1.S1_at

Description gb:AK121435.1
DB_XREF= gi:37991058
TID=Os.9948.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140A17, full insert sequence.
FL= gb:AK112033.1 gb:AK121435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3888011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os08g38910Os.7348.1.S1_a_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.1.S1_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.2.S1_x_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38920Os.54776.1.S1_at4/118+24465063..24465978Caffeoyl-CoA O-methyltransferase 2, putative
LOC_Os08g38930OsAffx.20329.1.S1_at2/118+24468548..24470660retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9948.1.S1_at--178--1271Chr08:24445961..24445985 (25 bp)
AGATTTCTGGCATTTCGTTCAGTCC
LOC_Os08g38880
Os.9948.1.S1_at--213--9631Chr08:24446013..24446037 (25 bp)
TCATGATCGGACCTATAGCAGCCTC
LOC_Os08g38880
Os.9948.1.S1_at--410--6731Chr08:24446058..24446082 (25 bp)
GTTCTACTCATACCTTGATTCTGCT
LOC_Os08g38880
Os.9948.1.S1_at--333--9091Chr08:24446092..24446116 (25 bp)
TGCTACTTGCAATCACTGGCAGAGT
LOC_Os08g38880
Os.9948.1.S1_at--493--271Chr08:24446177..24446201 (25 bp)
ATATGTCCATATCTGTAGCTGTTAC
LOC_Os08g38880
Os.9948.1.S1_at--760--2291Chr08:24446228..24446252 (25 bp)
AAATGGCCTGTTGCTTTTGCTGGAC
LOC_Os08g38880
Os.9948.1.S1_at--546--6891Chr08:24446259..24446283 (25 bp)
GTATCCATCAGACTTCAGGGTGAGC
LOC_Os08g38880
Os.9948.1.S1_at--200--7711Chr08:24446276..24446300 (25 bp)
GGGTGAGCAATCATCCTACGGAAGA
LOC_Os08g38880
Os.9948.1.S1_at--435--1311Chr08:24446303..24446327 (25 bp)
AGATGTTATCTGGTACGGCGCTGTC
LOC_Os08g38880
Os.9948.1.S1_at--521--251Chr08:24446349..24446373 (25 bp)
ATATCTTGACCTAGTTTCTGCTGCC
LOC_Os08g38880
Os.9948.1.S1_at--232--4171Chr08:24446470..24446494 (25 bp)
CGCCTCGTTGGGTTTACTACAATTG
LOC_Os08g38880
Target Sequence 
AGATTTCTGGCATTTCGTTCAGTCCCGACACCGAGGCTCTGTTCATCGGTGTTCATGATCGGACCTATAGCAGCCTCCTC
CAGTACAACCGGCTACGGTTCTACTCATACCTTGATTCTGCTATCTGAATTTGCTACTTGCAATCACTGGCAGAGTAATG
TGAGTTCTGAATCACAAAAAATTGTAGAAGCTAGTAAAGTAGTAGAGAAGATGTAGATATGTCCATATCTGTAGCTGTTA
CTGTAAAGGAACCTGAAATGCATCTGCAAATGGCCTGTTGCTTTTGCTGGACAAAACTGTATCCATCAGACTTCAGGGTG
AGCAATCATCCTACGGAAGAGAAGATGTTATCTGGTACGGCGCTGTCTACTTCAGCAAAGGCTGAAAAATATCTTGACCT
AGTTTCTGCTGCCGCCGGTGGCCGGCCGGACCGCCGTGTTGGACGACGTTGGCGGCGGCGGCGACCGTGTTGGGTCGAAA
TGGGCCCCCACAGAGCATATGGGCTGGACCGCCTCGTTGGGTTTACTACAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis