Browse Element(s) Details


Os.9991.1.S1_at

Description gb:AK064037.1
DB_XREF= gi:32974055
TID=Os.9991.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU082649(C60566)~cytosolic tRNA-Ala synthetase-like protein (OJ1057_E05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C09, full insert sequence.
FL= gb:AK064037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g154402/11alanyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15410OsAffx.30486.1.S1_at1/117+8903861..8910559hypothetical protein
LOC_Os07g15420OsAffx.28460.1.S1_at11/117+8913742..8917069hAT family dimerisation domain containing protein, expressed
LOC_Os07g15430Os.26882.1.S1_at11/117+8924439..8927180expressed protein
LOC_Os07g15440Os.9991.1.S1_at2/117+8928716..8942116alanyl-tRNA synthetase family protein, expressed
LOC_Os07g15450OsAffx.1431.1.S1_at8/117+8948666..8949295retrotransposon protein, putative, unclassified
LOC_Os07g15460Os.409.1.S1_at11/117+8964330..8969177Metal transporter Nramp1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006419biological_processalanyl-tRNA aminoacylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9991.1.S1_at--110--9131Chr07:8929039..8929063 (25 bp)
TGCTGTATTCACATTACCTGGAGTT
LOC_Os07g15440
Os.9991.1.S1_at--514--7731Chr07:8928842..8928866 (25 bp)
GGTGGAGCCTCTGTAGTGACTAGAT
LOC_Os07g15440
Os.9991.1.S1_at--1117--1291Chr07:8928684..8928708 (25 bp)
AGATGTCCGTTCTGGAATCCATGCC
NONE
Os.9991.1.S1_at--518--3031Chr07:8928669..8928693 (25 bp)
AATCCATGCCCTCAGCTACTAGTGG
NONE
Os.9991.1.S1_at--118--291Chr07:8928592..8928616 (25 bp)
ATAGTGTTTAGCTGGCTCTGGTGTC
NONE
Os.9991.1.S1_at--882--10811Chr07:8928545..8928569 (25 bp)
TTGTCTGTCTGGTTCCTGGTAAGAG
NONE
Os.9991.1.S1_at--287--6191Chr07:8928516..8928540 (25 bp)
GAGGACATATACCAAGAGCTTCGAA
NONE
Os.9991.1.S1_at--567--10431Chr07:8928464..8928488 (25 bp)
TTAGGCAGCTTACACATTGATGGTT
NONE
Os.9991.1.S1_at--1077--3751Chr07:8928415..8928439 (25 bp)
CTCTATCCCAATTTAACTATCACCT
NONE
Os.9991.1.S1_at--433--3711Chr07:8928392..8928416 (25 bp)
CTAAGCAAAGTTCTTCCATCCCAGT
NONE
Os.9991.1.S1_at--822--4333Chr11:23420714..23420736 (23 bp)
CCATCCCAGTTTAATCATCACCTAA
NONE
Target Sequence 
TGCTGTATTCACATTACCTGGAGTTGAATGACATGTTGGAAGAGTTGTTCTACAGTGGTATGATGACGAAAGAACTTTGG
CAAGTGTTCGAGGAGATATTGGATGTACACAACATGGTGGAGCCTCTGTAGTGACTAGATACACTTTTAATCACTGATTG
GAAGATATAACTGAAGATCGACAGATGTCCGTTCTGGAATCCATGCCCTCAGCTACTAGTGGCNANAAGAACCTGAGTAG
TCAAACGAACNAGTAATCGGCTGAAAGTTTCCTGTAGATAGTGTTTAGCTGGCTCTGGTGTCTTGTTTAGTTGTTTGTGA
CTGGTTGTCTGTCTGGTTCCTGGTAAGAGGCAAGAGGACATATACCAAGAGCTTCGAACTTGGTTCATGATGGTTTTCAT
CTGATTTAGGCAGCTTACACATTGATGGTTGTGTCCATCAGTATATTTTGTACTCTCTATCCCAATTTAACTATCACCTA
AGCAAAGTTCTTCCATCCCAGTTTAATCATCACCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis