Browse Element(s) Details


Os.9992.1.S1_a_at

Description gb:AK060287.1
DB_XREF= gi:32970305
TID=Os.9992.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 3-hydroxybutyryl-CoA dehydrogenase (P0699H05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-C09, full insert sequence.
FL= gb:AK060287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5838011/113-hydroxybutyryl-CoA dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein
LOC_Os01g58370OsAffx.11647.1.S1_at11/111+34055156..34055398hypothetical protein
LOC_Os01g58380Os.9992.1.S1_a_at11/111+34057226..340598583-hydroxybutyryl-CoA dehydrogenase, putative, expressed
LOC_Os01g58390Os.45906.1.S1_at6/111+34060342..34062309HAD superfamily phosphatase, TIGR01668 containing protein
LOC_Os01g58400Os.50275.1.S1_at11/111+34067498..34072706Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58410NANA1+34074835..34077087hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0005777cellular_componentperoxisome
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008691molecular_function3-hydroxybutyryl-CoA dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9992.1.S1_a_at--13--4851Chr01:34059309..34059333 (25 bp)
GCTAGGCACGAATCATCCCATGGGA
LOC_Os01g58380
Os.9992.1.S1_a_at--1090--791Chr01:34059328..34059352 (25 bp)
ATGGGACCTCTGCAGCTTGCTGATT
LOC_Os01g58380
Os.9992.1.S1_a_at--98--6831Chr01:34059359..34059383 (25 bp)
GTTTAGATGTCTGCCTTTCAGTGCT
LOC_Os01g58380
Os.9992.1.S1_a_at--749--4911Chr01:34059381..34059405 (25 bp)
GCTTCGGGTACTTCATAATGGCCTA
LOC_Os01g58380
Os.9992.1.S1_a_at--876--10111Chr01:34059445..34059469 (25 bp)
TATGTTGATGCTGGCCGACTTGGGA
LOC_Os01g58380
Os.9992.1.S1_a_at--681--2451Chr01:34059640..34059664 (25 bp)
AACACCTACAAGTTACGCCTTTGCA
LOC_Os01g58380
Os.9992.1.S1_a_at--639--2951Chr01:34059726..34059750 (25 bp)
AATGGCGGCCGTGTGATGTAAGCTA
LOC_Os01g58380
Os.9992.1.S1_a_at--958--9611Chr01:34059778..34059802 (25 bp)
TCATGCCTTAGGACTTCTGTAATCT
LOC_Os01g58380
Os.9992.1.S1_a_at--562--9751Chr01:34059797..34059821 (25 bp)
TAATCTCCTATGCAGAACTTCTCGC
LOC_Os01g58380
Os.9992.1.S1_a_at--845--4111Chr01:34059819..34059843 (25 bp)
CGCACGGTTTGCATTTTCAGTCAGC
LOC_Os01g58380
Os.9992.1.S1_a_at--928--10531Chr01:34059834..34059858 (25 bp)
TTCAGTCAGCACATATACGCACCGG
LOC_Os01g58380
Target Sequence 
GCTAGGCACGAATCATCCCATGGGACCTCTGCAGCTTGCTGATTTCATTGGTTTAGATGTCTGCCTTTCAGTGCTTCGGG
TACTTCATAATGGCCTAGGAGATAGCAAATACAGCCCTTGCCCTCTTNTCGTTCAATATGTTGATGCTGGCCGACTTGGG
AAGAAGCGTGGACAAGGCGTATACTCGTATAGGACAAGGTCTTCATCCATTAAACCGAGGTCATCTCTGTGAAAATCGAT
GTGCCTGCTGAGCAGAGAAAAGAATGCTCTTTATGGACTTTGTGTATCAATGTGAAAAAATAAGAAATGTGCAGTTTACA
GGTCCAACATAAACACCTACAAGTTACGCCTTTGCAAGTTGCNACAACAGGATACTGCAGGCCATGTTTGGGCTATGTAA
ACAAAGTACTCGGGAAAAATGGCGGCCGTGTGATGTAAGCTAATATGAANTGTATAGATACTGAGCAGATCATGCCTTAG
GACTTCTGTAATCTCCTATGCAGAACTTCTCGCACGGTTTGCATTTTCAGTCAGCACATATACGCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9992.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis