Browse Element(s) Details


Os.9996.1.S1_at

Description gb:AK059179.1
DB_XREF= gi:32969197
TID=Os.9996.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F11, full insert sequence.
FL= gb:AK059179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1099011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10950NANA11+6040065..6041559hypothetical protein
LOC_Os11g10960NANA11+6044464..6044850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.2.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.1.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.5.S1_x_at3/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.3.S1_x_at1/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10980Os.9996.2.S1_at11/1111+6054813..6061259pyruvate kinase family protein, expressed
LOC_Os11g10990Os.9996.1.S1_at11/1111+6060779..6062265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os11g11000Os.11947.1.S1_a_at10/1111+6063705..6069244ABC1 family protein, expressed
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9996.1.S1_at--237--3191Chr11:6061326..6061350 (25 bp)
CAAGGAGTACCACCCGGACACGACG
LOC_Os11g10990
Os.9996.1.S1_at--897--7891Chr11:6061219..6061243 (25 bp)
GGTTCTACGACTGGACGCTGGCGCA
LOC_Os11g10990
Os.9996.1.S1_at--138--851Chr11:6061076..6061100 (25 bp)
ATGGACCTCAGCGACCAGGCCATGA
LOC_Os11g10990
Os.9996.1.S1_at--333--7151Chr11:6060992..6061016 (25 bp)
GTCTTCTTCAAGGAGCAGTACTAGA
LOC_Os11g10990
Os.9996.1.S1_at--664--7011Chr11:6060975..6060999 (25 bp)
GTACTAGATTATTCATTCATGCCAG
LOC_Os11g10990
Os.9996.1.S1_at--908--10311Chr11:6060939..6060963 (25 bp)
TTTCAGGTACATATACACTCTCAAG
LOC_Os11g10990
Os.9996.1.S1_at--926--8751Chr11:6060913..6060937 (25 bp)
TGTTGTTTGCTATACGTACGGGTGT
LOC_Os11g10990
Os.9996.1.S1_at--622--2251Chr11:6060872..6060896 (25 bp)
AAATAAGTACTGCACATCCACACCA
LOC_Os11g10990
Os.9996.1.S1_at--259--1171Chr11:6060847..6060871 (25 bp)
AGTAACCAAATGTCCCTGTATCCTG
LOC_Os11g10990
Os.9996.1.S1_at--1102--3871Chr11:6060832..6060856 (25 bp)
CTGTATCCTGTATTTTGTCCACAAA
LOC_Os11g10990
Os.9996.1.S1_at--349--8811Chr11:6060800..6060824 (25 bp)
TGTTGCAATGTGTAAATAGGCTCTT
LOC_Os11g10990
Target Sequence 
CAAGGAGTACCACCCGGACACGACGTCGCTGCCGCTGCGGGAGGCGTCGGAGCGGTTCATCCGGCTGCGGGAGGCGTACA
ACGTGCTGAGCCGGGAGGAGTCGCGGCGGTTCTACGACTGGACGCTGGCGCAGGAGGCCGAGAGCCGGCGCCTCCAGCAG
CTGCGGTCCAGGCTCGAGGACCCCTACCAGCAGGACCTCGACAGCTACCAGTCCGTCCCCGACATGGTCGACCGCCTCGG
CGGCCGCAACATGGACCTCAGCGACCAGGCCATGACCGCGCTCACCATCGACATCGGCATCATCATCTTCTGCGTCTTCT
GCCTCATCTACGCCGTCTTCTTCAAGGAGCAGTACTAGATTATTCATTCATGCCAGGAAGAAGAAATTTTCAGGTACATA
TACACTCTCAAGATGTTGTTTGCTATACGTACGGGTGTATCATGATGTAATGCGAAATAAGTACTGCACATCCACACCAA
GTAACCAAATGTCCCTGTATCCTGTATTTTGTCCACAAAATTGGATTGTTGCAATGTGTAAATAGGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis