Browse Element(s) Details


OsAffx.10041.1.S1_at

Description tigr:9635.m02175
TID=OsAffx.10041.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2294011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein
LOC_Os07g22930Os.9212.1.S1_at11/117+12914751..12922613Granule-bound starch synthase 1b, chloroplast precursor, putative, expressed
LOC_Os07g22940OsAffx.10041.1.S1_at11/117+12923824..12924198hypothetical protein
LOC_Os07g22950Os.32983.2.A1_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.2.A1_x_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.1.A1_at6/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.4978.1.S2_at1/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22960OsAffx.15476.1.S1_at1/117+12929985..12948389retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10041.1.S1_at--246--10051Chr07:12924113..12924137 (25 bp)
TAGTCGCCGACGCAAACCTTGTTGA
LOC_Os07g22940
OsAffx.10041.1.S1_at--855--4471Chr07:12924108..12924132 (25 bp)
GCCGACGCAAACCTTGTTGAAGACG
LOC_Os07g22940
OsAffx.10041.1.S1_at--161--8631Chr07:12924094..12924118 (25 bp)
TGTTGAAGACGAAAGGGAGGCCACC
LOC_Os07g22940
OsAffx.10041.1.S1_at--435--551Chr07:12924067..12924091 (25 bp)
ATCCGTCGAACTACTTTGGGCTTCA
LOC_Os07g22940
OsAffx.10041.1.S1_at--660--9351Chr07:12924062..12924086 (25 bp)
TCGAACTACTTTGGGCTTCAGGAAC
LOC_Os07g22940
OsAffx.10041.1.S1_at--1044--3571Chr07:12924047..12924071 (25 bp)
CTTCAGGAACATGCGGGTTGGTGAA
LOC_Os07g22940
OsAffx.10041.1.S1_at--151--7911Chr07:12924032..12924056 (25 bp)
GGTTGGTGAAGAACGACGCGCACAT
LOC_Os07g22940
OsAffx.10041.1.S1_at--846--5111Chr07:12924013..12924037 (25 bp)
GCACATCTCAGCTACAACGGTTTAC
LOC_Os07g22940
OsAffx.10041.1.S1_at--1079--4831Chr07:12924003..12924027 (25 bp)
GCTACAACGGTTTACTGGCACAGGT
LOC_Os07g22940
OsAffx.10041.1.S1_at--1159--10671Chr07:12923919..12923943 (25 bp)
TTCCTTCTCCAAGTGGTGCGGCGAC
LOC_Os07g22940
OsAffx.10041.1.S1_at--27--9151Chr07:12923890..12923914 (25 bp)
TGCGGTCGCGGAGCATGATTTCGGC
LOC_Os07g22940
Target Sequence 
TAGTCGCCGACGCAAACCTTGTTGAAGACGAAAGGGAGGCCACCCCATCCGTCGAACTACTTTGGGCTTCAGGAACATGC
GGGTTGGTGAAGAACGACGCGCACATCTCAGCTACAACGGTTTACTGGCACAGGTGGTGGTGGGGGGTGGGCACTAGAAA
GGCGGTGGCGGTGACCCCTTATCTCTCCCTCTCCTTCCTTCTCCAAGTGGTGCGGCGACGAGGTGCGGTCGCGGAGCATG
ATTTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis