Browse Element(s) Details


Os.9212.1.S1_at

Description gb:AY069940.1
DB_XREF= gi:18139610
TID=Os.9212.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9212 (NCBI UniGene Cluster)
DEF=Oryza sativa granule binding starch synthase II precursor, mRNA, complete cds.
PROD=granule binding starch synthase II precursor
FL= gb:AY069940.1 gb:AK067654.1 gb:AK102058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2293011/11Granule-bound starch synthase 1b, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22870NANA7+12893981..12894424hypothetical protein
LOC_Os07g22880Os.10827.1.S1_x_at7/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22880Os.46055.2.S1_x_at6/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein
LOC_Os07g22930Os.9212.1.S1_at11/117+12914751..12922613Granule-bound starch synthase 1b, chloroplast precursor, putative, expressed
LOC_Os07g22940OsAffx.10041.1.S1_at11/117+12923824..12924198hypothetical protein
LOC_Os07g22950Os.32983.2.A1_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.2.A1_x_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.1.A1_at6/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.4978.1.S2_at1/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22960OsAffx.15476.1.S1_at1/117+12929985..12948389retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9212.1.S1_at--1076--9591Chr07:12916257..12916281 (25 bp)
TCATCTACTGGAGGACTTGTCGACA
LOC_Os07g22930
Os.9212.1.S1_at--743--2911Chr07:12916227..12916251 (25 bp)
AAGGAGGGCGTGACCGGATTCCACA
LOC_Os07g22930
Os.9212.1.S1_at--945--8851Chr07:12916085..12916109 (25 bp)
TGATCCAGTGGACGTCACAGCGGTT
LOC_Os07g22930
Os.9212.1.S1_at--574--6671Chr07:12916063..12916087 (25 bp)
GTTGCTTCAACTGTCAAACGGGCTC
LOC_Os07g22930
Os.9212.1.S1_at--677--8991Chr07:12916038..12916062 (25 bp)
TGAAGCAGTACAACACACCGGCATT
LOC_Os07g22930
Os.9212.1.S1_at--951--5451Chr07:12915998..12916022 (25 bp)
GAACTGCATGGCTCAAGACCTATCT
LOC_Os07g22930
Os.9212.1.S1_at--319--8971Chr07:12915462..12915486 (25 bp)
TGAAATTCTCCATGACGGTGCCTAG
LOC_Os07g22930
Os.9212.1.S1_at--726--1551Chr07:12915439..12915463 (25 bp)
AGCTTGCTGGCTTGTTTAGGTGACA
LOC_Os07g22930
Os.9212.1.S1_at--8--10091Chr07:12915404..12915428 (25 bp)
TAGGATCCCATGGACTTCTGAGCTC
LOC_Os07g22930
Os.9212.1.S1_at--149--2371Chr07:12915370..12915394 (25 bp)
AAAGCCACTATTTGTATCCCTGCAG
LOC_Os07g22930
Os.9212.1.S1_at--881--10311Chr07:12915335..12915359 (25 bp)
TTTCTCTCGTCTACTTCACGTGTAA
LOC_Os07g22930
Target Sequence 
TCATCTACTGGAGGACTTGTCGACACGGTTAAGGAGGGCGTGACCGGATTCCACATGGGTTTGTTCAATGTCGAGTGCGA
AACTGTTGATCCAGTGGACGTCACAGCGGTTGCTTCAACTGTCAAACGGGCTCTGAAGCAGTACAACACACCGGCATTCC
AAGAAATGGTTCAGAACTGCATGGCTCAAGACCTATCTTGGAAGGGACCTGCAAAGAAGTGGGAGGAGGTTCTTCTTGGG
TTGGGCGTTGAGGGGAGCCAGCCAGGCATCGAGGGTGAGGAGNTGGCGCCACTTGCCAAGGAAAACGTGGCCACTCCCTG
AAATTCTCCATGACGGTGCCTAGCTTGCTGGCTTGTTTAGGTGACAGGCAGCCTGATAGGATCCCATGGACTTCTGAGCT
CGCCACCGGCAAAGCCACTATTTGTATCCCTGCAGGCTTCTGCCATTTCTCTCGTCTACTTCACGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis