Browse Element(s) Details


Os.32983.2.A1_x_at

Description gb:NM_187829.1
DB_XREF= gi:34902743
GEN=P0710F09.38
TID=Os.32983.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, K9B18.5 (P0710F09.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, K9B18.5 (P0710F09.38), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2295011/11Adenylate kinase isoenzyme 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein
LOC_Os07g22930Os.9212.1.S1_at11/117+12914751..12922613Granule-bound starch synthase 1b, chloroplast precursor, putative, expressed
LOC_Os07g22940OsAffx.10041.1.S1_at11/117+12923824..12924198hypothetical protein
LOC_Os07g22950Os.32983.2.A1_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.2.A1_x_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.1.A1_at6/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.4978.1.S2_at1/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22960OsAffx.15476.1.S1_at1/117+12929985..12948389retrotransposon protein, putative, unclassified
LOC_Os07g22970OsAffx.5782.1.S1_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22970OsAffx.8326.1.S1_x_at1/117+12952278..12956731hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32983.2.A1_x_at--205--1451Chr07:12924976..12925000 (25 bp)
AGAAGAGCCTCCATGACGGCTGGGA
LOC_Os07g22950
Os.32983.2.A1_x_at--1040--1871Chr07:12925000..12925024 (25 bp)
ACGAGGAGCTCGAGTGCCACATCAT
LOC_Os07g22950
Os.32983.2.A1_x_at--925--7271Chr07:12925013..12925037 (25 bp)
GTGCCACATCATCAACGAGGACCTG
LOC_Os07g22950
Os.32983.2.A1_x_at--238--6171Chr07:12925029..12925271 (25 bp)
GAGGACCTGGAAAGCATTGGATTAC
LOC_Os07g22950
Os.32983.2.A1_x_at--1060--2191Chr07:12925273..12925297 (25 bp)
ACAACCAAGTAATCCAGTATGCACA
LOC_Os07g22950
Os.32983.2.A1_x_at--91--3451Chr07:12925287..12925308 (22 bp)
CAGTATGCACAGTTCCTCAGGTTTG
LOC_Os07g22950
Os.32983.2.A1_x_at--31--8011Chr07:12928277..12928301 (25 bp)
GGATGTGATTTCTTTCCAGAACGTT
LOC_Os07g22950
Os.32983.2.A1_x_at--529--7871Chr07:12928302..12928326 (25 bp)
GGTTTGACCTTGTAGTTGTGCTCCA
LOC_Os07g22950
Os.32983.2.A1_x_at--244--3151Chr07:12928339..12928363 (25 bp)
AATTCTGCATGATCGCTTGACTAGC
LOC_Os07g22950
Os.32983.2.A1_x_at--962--7871Chr07:12928453..12928477 (25 bp)
GGTTATATGGGTGCCAAGCTCACAA
LOC_Os07g22950
Os.32983.2.A1_x_at--523--1111Chr07:12928545..12928569 (25 bp)
AGTGATGCCCTTGCGAAGTGACAAT
LOC_Os07g22950
Target Sequence 
AGAAGAGCCTCCATGACGGCTGGGACGAGGAGCTCGAGTGCCACATCATCAACGAGGACCTGGAAAGCATTGGATTACCA
CAACCAAGTAATCCAGTATGCACAGTTCCTCAGGTTTGCGATGAGCTTGAGGACGTGATGGAAGAAGGTGGTATACTAGT
AGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGC
ATGATCGCTTGACTAGCAGAGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCAGATGCTCCTG
GAGGAGGCAAGGGAGAGCTACAAAGAGGAGATAGTGATGCCCTTGCGAAGTGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32983.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis