Browse Element(s) Details


OsAffx.10059.1.S1_at

Description tigr:9631.m00054
TID=OsAffx.10059.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0150011/11hypothetical protein
LOC_Os08g427001/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein
LOC_Os03g01450OsAffx.24935.1.S1_at7/113+287418..288747hypothetical protein
LOC_Os03g01460OsAffx.22275.1.S1_at11/113+290232..291020hypothetical protein
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10059.1.S1_at--744--4271Chr03:304054..304286 (25 bp)
CCTGATGAGAGGATTAGCGACGTAT
LOC_Os03g01500
OsAffx.10059.1.S1_at--253--1131Chr03:304039..304063 (25 bp)
AGCGACGTATACGACGAATTTTGGA
LOC_Os03g01500
OsAffx.10059.1.S1_at--499--10411Chr03:304021..304045 (25 bp)
TTTTGGAGCTCCTGTGAATGGCGCC
LOC_Os03g01500
OsAffx.10059.1.S1_at--188--4791Chr03:304014..304038 (25 bp)
GCTCCTGTGAATGGCGCCGGACTAG
LOC_Os03g01500
OsAffx.10059.1.S1_at--508--6151Chr03:303915..303939 (25 bp)
GAGGTCGAAATTGCGGTCCTTTTGC
LOC_Os03g01500
OsAffx.10059.1.S1_at--108--6691Chr03:303901..303925 (25 bp)
GGTCCTTTTGCCTCCGGTGTTGAGC
LOC_Os03g01500
OsAffx.10059.1.S1_at--591--3971Chr03:303887..303911 (25 bp)
CGGTGTTGAGCCTTCTAGTGGAAGA
LOC_Os03g01500
OsAffx.10059.1.S1_at--1060--91Chr03:303822..303842 (21 bp)
ATTCGTCGGTCGATCGGCCTCATGG
LOC_Os03g01500
OsAffx.10059.1.S1_at--813--4451Chr03:303533..303826 (25 bp)
GCCTCATGGCCCGACATTTGGGATA
LOC_Os03g01500
OsAffx.10059.1.S1_at--496--8214Chr08:26861194..26861367 (25 bp)
GGAATTATTTGAAAGGGCTGTTACA
LOC_Os08g42700
OsAffx.10059.1.S1_at--711--9851Chr03:303286..303310 (25 bp)
TACAGAGGGACTGCGGACGGCTGCT
LOC_Os03g01500
Target Sequence 
CCTGATGAGAGGATTAGCGACGTATACGACGAATTTTGGAGCTCCTGTGAATGGCGCCGGACTAGGGTTTCGGGGATTTT
TTCCTCCGGTGACGACGATTGAGTCAGCGGGAGTTGGGGGCGGATTTGAGGAGGTGAAAGAGGTCGAAATTGCGGTCCTT
TTGCCTCCGGTGTTGAGCCTTCTAGTGGAAGAACGAAGGAGTTATGGAGGCGGGAAGCTGGAGGTGTCGTCCGGGCATTC
GTCGGTCGATCGGCCTCATGGCCCGACATTTGGGATAGAATTTAATTTGGATTCAAAGGAATTATTTGAAAGGGCTGTTA
CAGAGGGACTGCGGACGGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis