Browse Element(s) Details


OsAffx.10065.1.S1_at

Description gb:NM_187537.1
DB_XREF= gi:34902159
TID=OsAffx.10065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OSJNBb0014I10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2110011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g296004/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21070OsAffx.12963.1.S1_at11/113+11966381..11967148hypothetical protein
LOC_Os03g21080Os.10949.1.S1_at11/113+11981181..11986623Guanine nucleotide exchange factor, putative, expressed
LOC_Os03g21090Os.31565.1.S1_at11/113+11987024..11991337Axi 1 protein, putative, expressed
LOC_Os03g21100OsAffx.10065.1.S1_at11/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21100Os.53970.1.S1_at1/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21110OsAffx.12964.1.S1_at10/113+11998042..12000162emp24/gp25L/p24 family protein
LOC_Os03g21120Os.8675.1.S1_at11/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21120OsAffx.10053.1.S1_x_at1/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21130OsAffx.22502.1.S1_x_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130OsAffx.22502.1.S1_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.5967.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.53420.1.S1_x_at3/113+12007759..12014194hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10065.1.S1_at--701--2831Chr03:11992772..11992796 (25 bp)
AAGTTTGTGCAGCACTTGTGCCGCA
LOC_Os03g21100
OsAffx.10065.1.S1_at--55--3592Chr03:16831350..16831374 (25 bp)
CATTTGTACTAGCTGGATGGCCAGG
LOC_Os03g29600
OsAffx.10065.1.S1_at--622--8151Chr03:11992519..11992543 (25 bp)
GGAAATATTACCTTGTCGACTCTGG
LOC_Os03g21100
OsAffx.10065.1.S1_at--1155--431Chr03:11992444..11992468 (25 bp)
ATCTTTAGGAGTATCGCGATGCCCC
LOC_Os03g21100
OsAffx.10065.1.S1_at--1004--591Chr03:11992431..11992450 (20 bp)
ATGCCCCTGAACCACAAGGTCATTG
LOC_Os03g21100
OsAffx.10065.1.S1_at--1133--5332Chr03:16831729..16831753 (25 bp)
GAAGATCCCTAGTTATGATCCTCGT
LOC_Os03g29600
OsAffx.10065.1.S1_at--563--10191Chr03:11992276..11992300 (25 bp)
TATAGTTGCATGTTGTGCGCTACAT
LOC_Os03g21100
OsAffx.10065.1.S1_at--460--6632Chr03:16831779..16831803 (25 bp)
GTTGTGCGCTACATAACTTCATTAG
LOC_Os03g29600
OsAffx.10065.1.S1_at--84--7372Chr03:16831818..16831842 (25 bp)
GTGACAAGCACTTCGATCGTTGTGA
LOC_Os03g29600
OsAffx.10065.1.S1_at--756--771Chr03:11992187..11992211 (25 bp)
ATGTGCCGCCACAAGCTAGTGACGA
LOC_Os03g21100
OsAffx.10065.1.S1_at--795--10071Chr03:11992171..11992195 (25 bp)
TAGTGACGATCAACCTGAGACCGAA
LOC_Os03g21100
Target Sequence 
AAGTTTGTGCAGCACTTGTGCCGCAAGGGCATGACAACACAAAATGTGATGGCTGTCTGTGACTTTGACATGAGGTTTAC
ATTTGTACTAGCTGGATGGCCAGGTTCGGGAAATATTACCTTGTCGACTCTGGGTACCCTAACCGGCCAGGTTGCCTTGC
TCCTTACAAGGGAACCAAGTATCATCTTTAGGAGTATCGCGATGCCCCTGAACCACAAGGTCATTGGAGTTTTGAAAATG
AAGTGGAGGATGTTGGAGAAGATCCCTAGTTATGATCCTCGTAAACAGGCACAAATTATAGTTGCATGTTGTGCGCTACA
TAACTTCATTAGGAAAAGTGGCATACGTGACAAGCACTTCGATCGTTGTGACTGTGATGAGAACTATGTGCCGCCACAAG
CTAGTGACGATCAACCTGAGACCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis