Browse Element(s) Details


OsAffx.10203.1.S1_x_at

Description gb:NM_186702.1
DB_XREF= gi:34900489
GEN=OSJNBa0061L20.25
TID=OsAffx.10203.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OSJNBa0061L20.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g112701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11230Os.53716.1.S1_at11/113+5756916..5758499expressed protein
LOC_Os03g11240OsAffx.25051.1.S1_at11/113+5759106..5767948Nucleotidyltransferase domain containing protein, expressed
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10203.1.S1_x_at--623--9131Chr07:7484612..7484636 (25 bp)
TCCCCGGCTGGGTGCGCGTCAAGGG
NONE
OsAffx.10203.1.S1_x_at--819--8391Chr07:7484567..7484591 (25 bp)
GGCGCAGCGAGTACTGCCTCGTCGA
NONE
OsAffx.10203.1.S1_x_at--1079--5771Chr07:7484502..7484526 (25 bp)
GACGAGTGCGTGCTCCGGCTCACTA
NONE
OsAffx.10203.1.S1_x_at--858--8311Chr07:7484486..7484510 (25 bp)
GGCTCACTACTCTGCGCGTGGTGTT
NONE
OsAffx.10203.1.S1_x_at--1035--9891Chr07:7484479..7484503 (25 bp)
TACTCTGCGCGTGGTGTTCGACGAC
NONE
OsAffx.10203.1.S1_x_at--1144--1852Chr07:7484459..7484483 (25 bp)
ACGACGGCGGCGAGCTCGTTGCCAC
NONE
OsAffx.10203.1.S1_x_at--1119--8411Chr07:7484426..7484450 (25 bp)
GGCCGGCAGGCTGCTACAAGTTTTC
NONE
OsAffx.10203.1.S1_x_at--553--2831Chr07:7484409..7484433 (25 bp)
AAGTTTTCAAGGTCTGGTGGGCTCT
NONE
OsAffx.10203.1.S1_x_at--1021--9711Chr07:7484403..7484427 (25 bp)
TCAAGGTCTGGTGGGCTCTGTACTC
NONE
OsAffx.10203.1.S1_x_at--901--9451Chr07:7484397..7484421 (25 bp)
TCTGGTGGGCTCTGTACTCTGCAAG
NONE
OsAffx.10203.1.S1_x_at--173--7591Chr07:7484391..7484415 (25 bp)
GGGCTCTGTACTCTGCAAGCGTTCT
NONE
Target Sequence 
TCCCCGGCTGGGTGCGCGTCAAGGGCGAGCTGGTGTACATGGGTGGGCGCAGCGAGTACTGCCTCGTCGAGTTGCTGGAG
CCCGAGGGTAGTAGGGACGAGGAGAAGTGCGACGAGTGCGTGCTCCGGCTCACTACTCTGCGCGTGGTGTTCGACGACGG
CGGCGAGCTCGTTGCCACCGCTCGCCGGCCGGCAGGCTGCTACAAGTTTTCAAGGTCTGGTGGGCTCTGTACTCTGCAAG
CGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10203.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis