Browse Element(s) Details

OsAffx.10342.1.S1_x_at

Description

gb:NM_185636.1
DB_XREF= gi:34898357
TID=OsAffx.10342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06730	2/11	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os05g23880	1/11	Lipoxygenase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06660	Os.36001.1.S1_at	11/11	6	+	3127080..3129960	expressed protein
LOC_Os06g06670	Os.32061.2.S1_x_at	11/11	6	+	3130222..3133227	expressed protein
LOC_Os06g06670	Os.32061.1.S1_at	10/11	6	+	3130222..3133227	expressed protein
LOC_Os06g06680	OsAffx.15289.1.S1_at	11/11	6	+	3134632..3135975	expressed protein
LOC_Os06g06690	OsAffx.27477.1.S1_at	8/11	6	+	3138201..3138653	hypothetical protein
LOC_Os06g06700	OsAffx.27477.3.S1_at	11/11	6	+	3138824..3139219	hypothetical protein
LOC_Os06g06700	OsAffx.27477.3.S1_s_at	11/11	6	+	3138824..3139219	hypothetical protein
LOC_Os06g06710	OsAffx.27478.1.S1_at	11/11	6	+	3141027..3142989	hypothetical protein
LOC_Os06g06710	OsAffx.15289.1.S1_at	1/11	6	+	3141027..3142989	hypothetical protein
LOC_Os06g06720	Os.4365.1.S1_at	11/11	6	+	3144478..3146612	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g06730	Os.47447.1.S1_at	11/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730	OsAffx.10342.1.S1_x_at	2/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06740	OsAffx.27479.1.S1_at	11/11	6	+	3159101..3161401	Myb-like DNA-binding domain containing protein
LOC_Os06g06750	Os.4367.1.S1_at	11/11	6	+	3161815..3168414	Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os06g06760	Os.15454.1.S2_x_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.15454.2.S1_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.15454.1.S1_x_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.44751.1.S1_at	10/11	6	+	3174807..3180712	U-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0009414	biological_process	response to water deprivation
GO:0009611	biological_process	response to wounding
GO:0009613	biological_process	response to pest, pathogen or parasite
GO:0009688	biological_process	abscisic acid biosynthesis
GO:0009695	biological_process	jasmonic acid biosynthesis
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009753	biological_process	response to jasmonic acid stimulus
GO:0009816	biological_process	defense response to pathogenic bacteria, incompatible interaction
GO:0030397	biological_process	membrane disassembly
GO:0040007	biological_process	growth
GO:0009507	cellular_component	chloroplast
GO:0016165	molecular_function	lipoxygenase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10342.1.S1_x_at--786--315	1	Chr06:3157799..3157823 (25 bp)	AATTGCCAGTTCGAAACGGAGGAGA	NONE
OsAffx.10342.1.S1_x_at--908--101	1	Chr06:3157792..3157816 (25 bp)	AGTTCGAAACGGAGGAGAGCACGAC	NONE
OsAffx.10342.1.S1_x_at--886--575	1	Chr06:3157770..3157794 (25 bp)	GACGGTGGGCGGAGCACTCACCTCC	NONE
OsAffx.10342.1.S1_x_at--278--865	1	Chr06:3157765..3157789 (25 bp)	TGGGCGGAGCACTCACCTCCGGCGT	NONE
OsAffx.10342.1.S1_x_at--189--839	1	Chr06:3157735..3157759 (25 bp)	GGCGCGAACTCCACGTCGCAAAAAA	NONE
OsAffx.10342.1.S1_x_at--519--459	1	Chr06:3157732..3157756 (25 bp)	GCGAACTCCACGTCGCAAAAAATCC	NONE
OsAffx.10342.1.S1_x_at--778--411	1	Chr06:3157690..3157714 (25 bp)	CGCATCCGGAGAACGCGGAGTTCGC	NONE
OsAffx.10342.1.S1_x_at--477--597	1	Chr06:3157682..3157706 (25 bp)	GAGAACGCGGAGTTCGCCGGCGCAG	NONE
OsAffx.10342.1.S1_x_at--868--227	1	Chr06:3157431..3157455 (25 bp)	AAAGGCAAAGCCTCCGGCCCGGCAG	NONE
OsAffx.10342.1.S1_x_at--842--601	1	Chr06:3157397..3157421 (25 bp)	GAGAGAGAGAGCTCCATCTTCCACG	LOC_Os06g06730
OsAffx.10342.1.S1_x_at--527--137	2	Chr05:13658530..13658550 (21 bp)	AGAGCTCCATCTTCCACGGCGACGA	LOC_Os05g23880

Target Sequence

AATTGCCAGTTCGAAACGGAGGAGAGCACGACGGTGGGCGGAGCACTCACCTCCGGCGTCGCGCGGCGCGAACTCCACGT
CGCAAAAAATCCCCCACCCCGCGGCGCGGCGCATCCGGAGAACGCGGAGTTCGCCGGCGCAGTCGACGGCCGCGGCGGCG
GCGGGACAAAAAAGGCAAAGCCTCCGGCCCGGCAGTGGGGGAGAGAGAGAGAGAGCTCCATCTTCCACGGCGACGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis