Browse Element(s) Details

OsAffx.10379.1.A1_at

Description

tigr:9634.m00069
TID=OsAffx.10379.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01710	10/11	expressed protein
LOC_Os06g01820	2/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01650	Os.22256.2.S1_x_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.1.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.2.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.1.S1_at	3/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_x_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01660	Os.44872.1.S1_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660	Os.44872.2.S1_x_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670	Os.23936.1.S1_at	11/11	6	+	397679..402494	myb family transcription factor, putative, expressed
LOC_Os06g01680	Os.9729.3.S1_a_at	11/11	6	+	402739..409270	expressed protein
LOC_Os06g01690	Os.32187.1.S1_at	11/11	6	+	409926..412035	Septum site-determining protein minD, putative, expressed
LOC_Os06g01700	Os.19955.1.S1_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700	Os.19955.1.S2_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710	OsAffx.10379.1.A1_at	10/11	6	+	415531..419161	expressed protein
LOC_Os06g01720	Os.50408.1.S1_at	11/11	6	+	419781..424168	expressed protein
LOC_Os06g01730	OsAffx.29607.2.S1_s_at	11/11	6	+	425064..429602	hypothetical protein
LOC_Os06g01740	NA	NA	6	+	429838..433798	hypothetical protein
LOC_Os06g01750	OsAffx.14351.1.S1_x_at	2/11	6	+	436156..437133	hypothetical protein
LOC_Os06g01760	Os.12825.1.S1_at	11/11	6	+	438061..440552	expressed protein
LOC_Os06g01770	Os.4441.1.S1_at	11/11	6	+	443998..446785	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10379.1.A1_at--1136--927	1	NONE	TCCGGCGCTGTGTTTGACATATTTG	NONE
OsAffx.10379.1.A1_at--86--657	2	Chr06:470093..470113 (21 bp)	GATTAAGCTCATCCTTGTGCTGCTG	LOC_Os06g01820
OsAffx.10379.1.A1_at--315--907	1	Chr06:415979..416003 (25 bp)	TGCTTTCCGCAGTAGAATTCGGCTG	LOC_Os06g01710
OsAffx.10379.1.A1_at--982--397	1	Chr06:415935..415959 (25 bp)	CGGGCAGAAGGCACAATCGTTGCCA	LOC_Os06g01710
OsAffx.10379.1.A1_at--1099--149	2	Chr06:470223..470247 (25 bp)	AGCACGGTGCATGTGTCGACGAAGA	LOC_Os06g01820
OsAffx.10379.1.A1_at--152--553	1	Chr06:415803..415827 (25 bp)	GAAAACCAGGCAACGCTGCTTCTGC	LOC_Os06g01710
OsAffx.10379.1.A1_at--520--1059	1	Chr06:415784..415808 (25 bp)	TTCTGCCAGTGGCTGTTCCTCGCGC	LOC_Os06g01710
OsAffx.10379.1.A1_at--373--785	1	Chr06:415732..415756 (25 bp)	GGTAGATTTCGCCTCTGAATCGGGC	LOC_Os06g01710
OsAffx.10379.1.A1_at--1143--591	1	Chr06:415674..415698 (25 bp)	GAGCTTGCTGTCCTCCACGGGATCG	LOC_Os06g01710
OsAffx.10379.1.A1_at--174--921	1	Chr06:415661..415685 (25 bp)	TCCACGGGATCGAACTCCAACTCAT	LOC_Os06g01710
OsAffx.10379.1.A1_at--81--619	1	Chr06:415599..415623 (25 bp)	GAGGACGTCCATGATGTACTCCACG	LOC_Os06g01710

Target Sequence

TCCGGCGCTGTGTTTGACATATTTGATCTGTCATTTGCAACATTTGTGTATGGAGTGGAAAGTTGGTTTGGTTNNNGNNN
NNNNNNNNANNNNNNNNANNNNNNGATTAAGCTCATCCTTGTGCTGCTGCTTTCCGCAGTAGAATTCGGCTGGGTGCAGA
ACGCGTCCGGGCGGGCAGAAGGCACAATCGTTGCCATTGGCGGCGGCGGCGGTGAGATCGGCATCGGCCGGCAGCTGCTG
GAGCACGGTGCATGTGTCGACGAAGAAGCTGTCAAGGACATAGGGGGTGAAGCGGAGCTCCGCGAAAACCAGGCAACGCT
GCTTCTGCCAGTGGCTGTTCCTCGCGCGAGTGCGAGCCACGAAGTTGATGTGGAGGTAGATTTCGCCTCTGAATCGGGCG
CAGCAGGCGTTGATGGGAGGCGGCAGGGGGATGAGCTTGCTGTCCTCCACGGGATCGAACTCCAACTCATCCTCTGCTCT
GCTGCAGAAGAAGGCGTGGTAAAAGGGGAGGACGTCCATGATGTACTCCACG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis