Browse Element(s) Details


OsAffx.10558.2.S1_at

Description tigr:9629.m00552
TID=OsAffx.10558.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0626011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified
LOC_Os01g06210Os.1899.1.S1_at1/111+2951316..2952306PrMC3, putative
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10558.2.S1_at--762--5851Chr01:2967240..2967264 (25 bp)
GACCAATATGGTACGACCGGTGCCT
LOC_Os01g06260
OsAffx.10558.2.S1_at--564--3971Chr01:2967257..2967281 (25 bp)
CGGTGCCTGTGATGAATCTTTCTTG
LOC_Os01g06260
OsAffx.10558.2.S1_at--1108--4471Chr01:2967261..2967285 (25 bp)
GCCTGTGATGAATCTTTCTTGCTCA
LOC_Os01g06260
OsAffx.10558.2.S1_at--882--7391Chr01:2967265..2967289 (25 bp)
GTGATGAATCTTTCTTGCTCAGAAT
LOC_Os01g06260
OsAffx.10558.2.S1_at--322--5251Chr01:2967270..2967294 (25 bp)
GAATCTTTCTTGCTCAGAATGACAC
LOC_Os01g06260
OsAffx.10558.2.S1_at--1068--10551Chr01:2967276..2967300 (25 bp)
TTCTTGCTCAGAATGACACCATTGC
LOC_Os01g06260
OsAffx.10558.2.S1_at--486--7731Chr01:2967383..2967407 (25 bp)
GGTGGTTTTTCATGAGCATAAAAAC
LOC_Os01g06260
OsAffx.10558.2.S1_at--3--5931Chr01:2967396..2967420 (25 bp)
GAGCATAAAAACACCATCAAGAAAT
LOC_Os01g06260
OsAffx.10558.2.S1_at--1035--6451Chr01:2967426..2967450 (25 bp)
GATAATTTAAAACATGCGCTTCGTA
LOC_Os01g06260
OsAffx.10558.2.S1_at--722--2411Chr01:2967434..2967458 (25 bp)
AAAACATGCGCTTCGTAGATATAAA
LOC_Os01g06260
OsAffx.10558.2.S1_at--234--7591Chr01:2967478..2967502 (25 bp)
GGGCTATTCTACTTGGTGCCAAGGA
LOC_Os01g06260
Target Sequence 
GACCAATATGGTACGACCGGTGCCTGTGATGAATCTTTCTTGCTCAGAATGACACCATTGCACAAGGAACTATCTTTGCG
CACAGAAGCGATATATGTTTCAGCTTTCTACGAAATGTTGAAGGCAAACGGTATGCACCAGTGGGTGGTTTTTCATGAGC
ATAAAAACACCATCAAGAAATCACTCGATAATTTAAAACATGCGCTTCGTAGATATAAAAAGCAATCGAATAAAATTGGG
GCTATTCTACTTGGTGCCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10558.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis