Browse Element(s) Details


OsAffx.10573.1.S1_at

Description gb:NM_184318.1
DB_XREF= gi:34895715
GEN=P0019D06.15
TID=OsAffx.10573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0019D06.15 (P0019D06.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g058401/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05810Os.6844.1.S1_at11/1111+2683848..2684983expressed protein
LOC_Os11g05810Os.6844.1.S1_x_at10/1111+2683848..2684983expressed protein
LOC_Os11g05820Os.55076.1.S1_at11/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05820OsAffx.6089.1.S1_at1/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05830OsAffx.18695.1.S1_at11/1111+2704004..2704342hypothetical protein
LOC_Os11g05840OsAffx.30834.1.S1_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30834.1.S1_x_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840Os.46785.2.S1_x_at3/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30226.2.S1_x_at2/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.5278.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.10573.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.442.1.S1_x_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05850Os.11817.1.S1_a_at11/1111+2726047..2732547cyclin family protein, putative, expressed
LOC_Os11g05860Os.9519.1.S1_at11/1111+2734343..2735367Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05870Os.53155.1.S1_s_at11/1111+2742264..2745674Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10573.1.S1_at--414--6991Chr01:2285579..2285603 (25 bp)
GTACGCCTGGTTTGATTACTCCAAT
NONE
OsAffx.10573.1.S1_at--965--10471Chr01:2285594..2285618 (25 bp)
TTACTCCAATTTTAGGGTTCATCTG
NONE
OsAffx.10573.1.S1_at--730--5551Chr01:2286681..2286705 (25 bp)
GAAACCATAGAGTTCTGTTCCTTCC
NONE
OsAffx.10573.1.S1_at--37--3872Chr01:2286695..2286719 (25 bp)
CTGTTCCTTCCATAGTTACCAAGAT
NONE
OsAffx.10573.1.S1_at--1053--1331Chr01:2287153..2287177 (25 bp)
AGAGTCAGAGACCAACCAATCAGCC
NONE
OsAffx.10573.1.S1_at--201--3071Chr01:2287170..2287194 (25 bp)
AATCAGCCCCATACGTTTGGAGCTC
NONE
OsAffx.10573.1.S1_at--895--1411Chr01:2287252..2287276 (25 bp)
AGACACGCTGTGACGGGTGGTCCCC
NONE
OsAffx.10573.1.S1_at--610--5991Chr01:2287310..2287463 (25 bp)
GAGACCGTCCGATCACGGGATGTTA
NONE
OsAffx.10573.1.S1_at--131--6771Chr01:2287460..2287484 (25 bp)
GTTACTTCCTTTAATGGGCCGTCAT
NONE
OsAffx.10573.1.S1_at--548--2371Chr01:2287503..2287527 (25 bp)
AAACGAGGCCTAGAGTATTTGCAGA
NONE
OsAffx.10573.1.S1_at--595--10051Chr01:2287531..2287555 (25 bp)
TAGTATGGGCCGGACTTGCAGTTAT
NONE
Target Sequence 
GTACGCCTGGTTTGATTACTCCAATTTTAGGGTTCATCTGGCTAAAACCCCAAAAGAAGTAACGCCAGCTAACAACCAAA
GATGGTCCTCAGTGAGGATGGACTCTAGAACCACTGAGACCGAAGAGAGAGCAGAGTCGGAAACCATAGAGTTCTGTTCC
TTCCATAGTTACCAAGATAACATGAGGAGCAGGGAGTCGAAGCTGACAGTCAGTCTGTCACTCTGTCAGAGTCAGAGACC
AACCAATCAGCCCCATACGTTTGGAGCTCCTCGCCGCTTCAAATTATGGCCGCCGTCTCCGGCGGCCGGCGGCGGAGGCG
CCGCGCAGACACGCTGTGACGGGTGGTCCCCACGCGTCAGGGAAACACATGGCTGGTCCCCCACGAGACCGTCCGATCAC
GGGATGTTACTTCCTTTAATGGGCCGTCATGAAGTCGGGCCCCGGAAGAAACGAGGCCTAGAGTATTTGCAGAAATTAGT
ATGGGCCGGACTTGCAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis