Browse Element(s) Details


OsAffx.10792.1.S1_at

Description gb:AK107728.1
DB_XREF= gi:32992937
TID=OsAffx.10792.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-F05, full insert sequence.
FL= gb:AK107728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g335691/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA
LOC_Os01g33580OsAffx.11392.1.S1_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.4.S1_s_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.2.S1_x_at3/111+18808964..18810421hypothetical protein
LOC_Os01g33590Os.46314.3.S1_at2/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.265.1.S1_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.7362.1.S1_x_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33609OsAffx.24844.1.S1_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33609OsAffx.23366.2.S1_s_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10792.1.S1_at--516--7011NONE
GTACACTACCCATTTGGGAATTGGC
NONE
OsAffx.10792.1.S1_at--476--7611NONE
GGGAATTGGCAAATCACAGTCATAC
NONE
OsAffx.10792.1.S1_at--11--8251NONE
GGCAAATCACAGTCATACTTCTTAG
NONE
OsAffx.10792.1.S1_at--699--8071NONE
GGAGCACCAGCACCTTAAGCTGCAC
NONE
OsAffx.10792.1.S1_at--522--2691NONE
AAGCTGCACCAGTATCTTAGTAAGA
NONE
OsAffx.10792.1.S1_at--322--6491NONE
GATAGACACCGATTAAGAAACCGAG
NONE
OsAffx.10792.1.S1_at--452--5551NONE
GAAACCGAGAAGTCTAGATTATGGG
NONE
OsAffx.10792.1.S1_at--646--7631NONE
GGGACTCTATAAGTTTTTCTCAGAT
NONE
OsAffx.10792.1.S1_at--640--1211NONE
AGTTTTTCTCAGATTTCCTGTCTCT
NONE
OsAffx.10792.1.S1_at--104--9631Chr03:31523144..31523168 (25 bp)
TCATGCGCCCTCATGCGGTAGCTGG
NONE
OsAffx.10792.1.S1_at--333--5236Chr09:12115007..12115066 (24 bp)
GAATTTGTGATTGATTGCATGGATC
NONE
Target Sequence 
GTACACTACCCATTTGGGAATTGGCAAATCACAGTCATACTTCTTAGAGTGGGGTGGAGCACCAGCACCTTAAGCTGCAC
CAGTATCTTAGTAAGATAGACACCGATTAAGAAACCGAGAAGTCTAGATTATGGGGACTCTATAAGTTTTTCTCAGATTT
CCTGTCTCTTCCTTCTCCCATCTCTTCCTCTACCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACTTCTTAGGCGC
TCTCCTCCCCACTTCTCAGGCGGCGGCGCCCGGGCGGCCGCGGAGGCGGCCTCATGCGCCCTCATGCGGTAGCTGGGCGG
CGAGGTACAACGCGCGGTGGGCGGCGGGGCAGCGCGTGGCGTGGGCGGCGGGGCCGCGCACGGGGCGGCAGCGCGCCGGC
TCTCCTCTCTTTTTTTTTTAATAATTTGTGATTGAGATATGTATAATTTCTTTTTTAGAATTTGTGATTGATTGCATGGA
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis