Browse Element(s) Details


OsAffx.10909.1.S1_at

Description tigr:9629.m00393
TID=OsAffx.10909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L24, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0473010/1160S ribosomal protein L26-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed
LOC_Os01g04760OsAffx.23115.1.S1_at11/111+2159525..2159773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10909.1.S1_at--352--6371NONE
GATCGATTAGGTTATAACACATCAC
NONE
OsAffx.10909.1.S1_at--636--2471Chr01:2135668..2135692 (25 bp)
AACACATCACTGTAGTTTAATTCGA
LOC_Os01g04730
OsAffx.10909.1.S1_at--1111--6811Chr01:2135682..2135706 (25 bp)
GTTTAATTCGACATGGTGTTGCACT
LOC_Os01g04730
OsAffx.10909.1.S1_at--33--5671Chr01:2135691..2135715 (25 bp)
GACATGGTGTTGCACTATCATACTG
LOC_Os01g04730
OsAffx.10909.1.S1_at--824--5111Chr01:2135702..2135726 (25 bp)
GCACTATCATACTGCTTTCCTTAGG
LOC_Os01g04730
OsAffx.10909.1.S1_at--59--431Chr01:2135707..2135731 (25 bp)
ATCATACTGCTTTCCTTAGGGCAAC
LOC_Os01g04730
OsAffx.10909.1.S1_at--601--1971Chr01:2135712..2135736 (25 bp)
ACTGCTTTCCTTAGGGCAACTGGCA
LOC_Os01g04730
OsAffx.10909.1.S1_at--465--9251Chr01:2135719..2135743 (25 bp)
TCCTTAGGGCAACTGGCATTTCGTT
LOC_Os01g04730
OsAffx.10909.1.S1_at--642--5151Chr01:2135727..2135751 (25 bp)
GCAACTGGCATTTCGTTTGGATCCT
LOC_Os01g04730
OsAffx.10909.1.S1_at--56--8291Chr01:2135733..2135757 (25 bp)
GGCATTTCGTTTGGATCCTACGTGA
LOC_Os01g04730
OsAffx.10909.1.S1_at--746--10611Chr01:2135738..2135762 (25 bp)
TTCGTTTGGATCCTACGTGAACTAG
LOC_Os01g04730
Target Sequence 
GATCGATTAGGTTATAACACATCACTGTAGTTTAATTCGACATGGTGTTGCACTATCATACTGCTTTCCTTAGGGCAACT
GGCATTTCGTTTGGATCCTACGTGAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis