Browse Element(s) Details


OsAffx.10917.1.S1_at

Description tigr:9629.m00463
TID=OsAffx.10917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0540011/11hypothetical protein
LOC_Os04g135301/11Core histone H2A/H2B/H3/H4 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05350OsAffx.22782.2.S1_at10/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.18362.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350Os.56255.1.S1_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05350OsAffx.23361.2.S1_x_at1/111+2526191..2529277hypothetical protein
LOC_Os01g05360OsAffx.1940.1.S1_at11/111+2532102..2532482hypothetical protein
LOC_Os01g05370NANA1+2532627..2537565retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05380Os.51592.1.S1_at10/111+2538815..2539230hypothetical protein
LOC_Os01g05390OsAffx.10916.1.S1_at11/111+2544717..2545100hypothetical protein
LOC_Os01g05400OsAffx.10917.1.S1_at11/111+2547748..2548923hypothetical protein
LOC_Os01g05410OsAffx.22782.1.S1_x_at11/111+2550422..2550823hypothetical protein
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10917.1.S1_at--1113--551Chr01:2547790..2547814 (25 bp)
ATCCTCGCCAAACGCAGGGAGATAC
LOC_Os01g05400
OsAffx.10917.1.S1_at--628--5791Chr01:2547940..2547964 (25 bp)
GACGAAGGCACCAACGAGATGTTCC
LOC_Os01g05400
OsAffx.10917.1.S1_at--648--8332Chr04:7526685..7526709 (25 bp)
GGCTGCTTGCCCTTGACAGCGGGCT
LOC_Os04g13530
OsAffx.10917.1.S1_at--592--10731Chr01:2547991..2548015 (25 bp)
TTGACAGCGGGCTGCTACGCGTCAT
LOC_Os01g05400
OsAffx.10917.1.S1_at--225--9091Chr01:2548003..2548027 (25 bp)
TGCTACGCGTCATCGCCGGTGATCG
LOC_Os01g05400
OsAffx.10917.1.S1_at--306--871Chr01:2548757..2548781 (25 bp)
ATGGCGACGGCTACCAGGAAGGCAA
LOC_Os01g05400
OsAffx.10917.1.S1_at--670--931Chr01:2548772..2548796 (25 bp)
AGGAAGGCAACACCTGGCTATCCTC
LOC_Os01g05400
OsAffx.10917.1.S1_at--186--9271Chr01:2548795..2548819 (25 bp)
TCCTCCCTCTGTCGAATTGAATCGT
LOC_Os01g05400
OsAffx.10917.1.S1_at--272--8051Chr01:2548821..2548845 (25 bp)
GGAGAGTTTGTCGACACCACTGAAA
LOC_Os01g05400
OsAffx.10917.1.S1_at--1084--2991Chr01:2548846..2548870 (25 bp)
AATGAGAATGACGATTCCATCTTCT
LOC_Os01g05400
OsAffx.10917.1.S1_at--353--10591Chr01:2548867..2548891 (25 bp)
TTCTCCCTGCCGACAAATATAGCTG
LOC_Os01g05400
Target Sequence 
ATCCTCGCCAAACGCAGGGAGATACGGAAGCGGGAGATGGAGGGTGTCGTGGTGTTCGCCGACGAGAACAGCATCCTCCG
GACGGAGCTGTTCGACGAGGTGCAGAAGGTGAAGTCAGTGGGCGCCATGCCTGTCGGCGTCCTTGGCGAGGACGAAGGCA
CCAACGAGATGTTCCTCCAGGCGCCGCCGGGCTGCTTGCCCTTGACAGCGGGCTGCTACGCGTCATCGCCGGTGATCGCC
TCCGGCGAACCCGAGTTCGCTCCGGCCCCCTTCTGCCGCTGCCCCTCCGACCCCCGCCCGCCACCGCCACCGTCGCCGTC
AATCCGGTCTCTGCTCCCCCGCGCAGATGGCGACGGCTACCAGGAAGGCAACACCTGGCTATCCTCCTCCCTCTGTCGAA
TTGAATCGTTGGAGAGTTTGTCGACACCACTGAAAAATGAGAATGACGATTCCATCTTCTCCCTGCCGACAAATATAGCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis