Browse Element(s) Details


OsAffx.11109.1.S1_at

Description gb:NM_189166.1
DB_XREF= gi:34905415
GEN=P0487H02.1
TID=OsAffx.11109.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0487H02.1 (P0487H02.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1928011/11hypothetical protein
LOC_Os05g461704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19220Os.2075.1.S1_at11/111+10868248..10871040Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os01g19230NANA1+10872519..10873122hypothetical protein
LOC_Os01g19240OsAffx.23303.1.S1_at11/111+10874413..10878471Integral membrane protein DUF6 containing protein
LOC_Os01g19250NANA1+10882669..10882983hypothetical protein
LOC_Os01g19260Os.2081.1.S1_at11/111+10888588..10890585ATPase, AAA family protein, expressed
LOC_Os01g19270OsAffx.11108.1.S1_at11/111+10892380..10894223hypothetical protein
LOC_Os01g19280OsAffx.11109.1.S1_at11/111+10895866..10897128hypothetical protein
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11109.1.S1_at--168--171Chr01:10896431..10896455 (25 bp)
ATTTCCTCACCCGAGCGGAAGACGT
LOC_Os01g19280
OsAffx.11109.1.S1_at--354--1392Chr05:26694294..26694318 (25 bp)
AGACGTCCTTGCGTGCGAAGAACCA
LOC_Os05g46170
OsAffx.11109.1.S1_at--7--5432Chr05:26694313..26694337 (25 bp)
GAACCACCGGTCTTCTACAGAGATT
LOC_Os05g46170
OsAffx.11109.1.S1_at--163--1351Chr01:10896375..10896399 (25 bp)
AGAGATTCCGTGAGTCTGGTCCCGG
LOC_Os01g19280
OsAffx.11109.1.S1_at--762--5451Chr01:10896316..10896340 (25 bp)
GAACGAGACTGTTCTTGCTCGCTAC
LOC_Os01g19280
OsAffx.11109.1.S1_at--768--4172Chr05:26694545..26694569 (25 bp)
CCCAGAATCGCTCTGCTCATTTTGA
LOC_Os05g46170
OsAffx.11109.1.S1_at--828--3811Chr01:10896079..10896103 (25 bp)
CTCCAGATCCTACAAGGCGGGTGAT
LOC_Os01g19280
OsAffx.11109.1.S1_at--774--712Chr05:26694701..26694725 (25 bp)
ATGATCCGAGCATCCACCAGATGAT
LOC_Os05g46170
OsAffx.11109.1.S1_at--673--6291Chr01:10895995..10896019 (25 bp)
GATGATCATCGGTGATGCACCCAAA
LOC_Os01g19280
OsAffx.11109.1.S1_at--482--6971Chr01:10895965..10895989 (25 bp)
GTACCTCTGCAGTGACAACGGTAAA
LOC_Os01g19280
OsAffx.11109.1.S1_at--606--791Chr01:10895941..10895965 (25 bp)
ATGGTCGAGAGCACCAACTGATCCC
LOC_Os01g19280
Target Sequence 
ATTTCCTCACCCGAGCGGAAGACGTCCTTGCGTGCGAAGAACCACCGGTCTTCTACAGAGATTCCGTGAGTCTGGTCCCG
GCAAACATGTTCTTCCTGCCGCGCGTCCACGACGAGAACGAGACTGTTCTTGCTCGCTACCTCGTGGGGTCCGGCAAGAA
GCTGCTCATGGTGGTCAGGCTAGCTAGTGGCCGGGGTCAGCGCACGACGTCGGCGTTCCGGGTGTTCCAGAAGAAAAAGT
TCAACACCGGCGAAGAAGACGAGCCGTCCCAGAATCGCTCTGCTCATTTTGAGTACTACTGGAGCGAGCTGGACGAGCTC
GATGGCCGGATGCTGTTCGTCGGACTAGGCTGCTCCAGATCCTACAAGGCGGGTGATGGCAGGTACCCCGGCATGGAGGA
GGGCGTCTACTTCTTGGATGATCCGAGCATCCACCAGATGATCATCGGTGATGCACCCAAACCGCCGTACCTCTGCAGTG
ACAACGGTAAATGGTCGAGAGCACCAACTGATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis