Browse Element(s) Details


OsAffx.11132.1.S1_at

Description tigr:9629.m01991
TID=OsAffx.11132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g209008/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20880Os.45752.1.S1_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20880OsAffx.11132.2.S1_x_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11132.1.S1_at--307--671Chr01:11663573..11663715 (25 bp)
ATGAAGCACCAGAGTTGAGAGGACA
LOC_Os01g20900
OsAffx.11132.1.S1_at--343--5391Chr01:11663575..11663717 (25 bp)
GAAGCACCAGAGTTGAGAGGACAGT
LOC_Os01g20900
OsAffx.11132.1.S1_at--587--2711Chr01:11663576..11663718 (25 bp)
AAGCACCAGAGTTGAGAGGACAGTA
LOC_Os01g20900
OsAffx.11132.1.S1_at--731--9812Chr01:11642531..11642682 (25 bp)
TAACTGGTCGCAAAGCTACACCAAG
NONE
OsAffx.11132.1.S1_at--313--2571Chr01:11663770..11663924 (25 bp)
AACTGGTCGCAAAGCTACACCAAGG
LOC_Os01g20900
OsAffx.11132.1.S1_at--501--1951Chr01:11663771..11663925 (25 bp)
ACTGGTCGCAAAGCTACACCAAGGC
LOC_Os01g20900
OsAffx.11132.1.S1_at--266--3911Chr01:11663772..11663926 (25 bp)
CTGGTCGCAAAGCTACACCAAGGCT
LOC_Os01g20900
OsAffx.11132.1.S1_at--189--8612Chr01:11642535..11642686 (25 bp)
TGGTCGCAAAGCTACACCAAGGCTT
NONE
Target Sequence 
ATGAAGCACCAGAGTTGAGAGGACAGTATAGTGTAAAGAGCGATGTCTACGCCTTTGGGGTTGTATTGTTGGAGCTTTTA
ACTGGTCGCAAAGCTACACCAAGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis