Browse Element(s) Details


OsAffx.11142.1.S1_at

Description tigr:9629.m02042
TID=OsAffx.11142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2137011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21340OsAffx.23321.1.S1_at11/111+11899989..11900390hypothetical protein
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein
LOC_Os01g21360NANA1+11916796..11919966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21370OsAffx.11142.1.S1_at11/111+11923420..11925417transposon protein, putative, unclassified
LOC_Os01g21380OsAffx.23323.1.S1_x_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21380OsAffx.23323.1.S1_at11/111+11926744..11928118FAD dependent oxidoreductase family protein, expressed
LOC_Os01g21390OsAffx.10645.1.S1_at3/111+11929226..11929537hypothetical protein
LOC_Os01g21400NANA1+11930934..11932211retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21410OsAffx.11144.1.S1_at11/111+11935823..11937913expressed protein
LOC_Os01g21410Os.23598.1.S1_at10/111+11935823..11937913expressed protein
LOC_Os01g21420Os.26827.2.A1_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.2.A1_x_at11/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420OsAffx.17633.1.S1_at4/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21420Os.26827.1.A1_at2/111+11939349..11946839RNA recognition motif family protein
LOC_Os01g21430OsAffx.23324.1.S1_at11/111+11950277..11951178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11142.1.S1_at--693--911Chr01:11925336..11925360 (25 bp)
AGGCTGCTTACTAACCTCGACAAGT
LOC_Os01g21370
OsAffx.11142.1.S1_at--853--2851Chr01:11925316..11925339 (24 bp)
AAGTGCTCCATCACTCCAATCAGGA
LOC_Os01g21370
OsAffx.11142.1.S1_at--652--5391Chr01:11924263..11924287 (25 bp)
GAAGCGGATCACCATATCTTGGTGG
LOC_Os01g21370
OsAffx.11142.1.S1_at--532--431Chr01:11924248..11924272 (25 bp)
ATCTTGGTGGAGTGCGTATTCGCTT
LOC_Os01g21370
OsAffx.11142.1.S1_at--940--7591Chr01:11924214..11924238 (25 bp)
GGGCACAAGTTGCTATCCAAGATTG
LOC_Os01g21370
OsAffx.11142.1.S1_at--253--3231Chr01:11924197..11924221 (25 bp)
CAAGATTGGGTTGGCCTTCCTCTCA
LOC_Os01g21370
OsAffx.11142.1.S1_at--561--1731Chr01:11924173..11924197 (25 bp)
ACCATGCCACTCATTGACCAAAACG
LOC_Os01g21370
OsAffx.11142.1.S1_at--575--2591Chr01:11923652..11923673 (22 bp)
AACGATCTGTTTCAAGTTTTGTGCA
LOC_Os01g21370
OsAffx.11142.1.S1_at--338--4852Chr04:26330527..26330572 (24 bp)
GCTACAGCGCGGACACATGTGAGAT
NONE
OsAffx.11142.1.S1_at--4--791Chr01:11923595..11923619 (25 bp)
ATGTGAGATGCTTCATTCCCATGAC
LOC_Os01g21370
OsAffx.11142.1.S1_at--481--10651Chr01:11923580..11923604 (25 bp)
TTCCCATGACCTTCATTTCACAGAA
LOC_Os01g21370
Target Sequence 
AGGCTGCTTACTAACCTCGACAAGTGCTCCATCACTCCAATCAGGAGCTGGAAGCGGATCACCATATCTTGGTGGAGTGC
GTATTCGCTTGAACAAGTTGGGCACAAGTTGCTATCCAAGATTGGGTTGGCCTTCCTCTCACCATGCCACTCATTGACCA
AAACGATCTGTTTCAAGTTTTGTGCAAGTGAAGAAGAAAACAGCTACAGCGCGGACACATGTGAGATGCTTCATTCCCAT
GACCTTCATTTCACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis