Browse Element(s) Details


OsAffx.11146.2.A1_at

Description tigr:9629.m02070
TID=OsAffx.11146.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2164011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21600NANA1+12081472..12084709retrotransposon protein, putative, unclassified
LOC_Os01g21610Os.32197.2.S1_x_at11/111+12091352..12093194Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
LOC_Os01g21620OsAffx.23327.1.S1_s_at11/111+12095465..12096325expressed protein
LOC_Os01g21620OsAffx.23327.2.S1_at10/111+12095465..12096325expressed protein
LOC_Os01g21630Os.15206.1.S1_at11/111+12099588..12105507Pectinesterase, putative, expressed
LOC_Os01g21640OsAffx.11146.2.A1_at11/111+12108903..12109714expressed protein
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11146.2.A1_at--363--71Chr01:12109068..12109092 (25 bp)
ATTGCTTACCCTATTGCAGGTCGGA
LOC_Os01g21640
OsAffx.11146.2.A1_at--1004--5011Chr01:12109083..12109107 (25 bp)
GCAGGTCGGACAATCCATGCGGCGT
LOC_Os01g21640
OsAffx.11146.2.A1_at--346--4991Chr01:12109115..12109139 (25 bp)
GCATGCCCGTACATTTCAGCAGCAG
LOC_Os01g21640
OsAffx.11146.2.A1_at--266--3791Chr01:12109285..12109309 (25 bp)
CTCGGAGAGAACATGCGCGGGCACT
LOC_Os01g21640
OsAffx.11146.2.A1_at--667--9151Chr01:12109298..12109322 (25 bp)
TGCGCGGGCACTAATTGGTGGCCAC
LOC_Os01g21640
OsAffx.11146.2.A1_at--962--7531Chr01:12109348..12109372 (25 bp)
GTGGCTGAAGCACATCTTGTGCTCC
LOC_Os01g21640
OsAffx.11146.2.A1_at--6--5891Chr01:12109394..12109418 (25 bp)
GAGCGCCGACGACATGTCTGCAGCA
LOC_Os01g21640
OsAffx.11146.2.A1_at--884--5791Chr01:12109427..12109451 (25 bp)
GACGCACACAGAGGATGCTACTTCA
LOC_Os01g21640
OsAffx.11146.2.A1_at--37--4171Chr01:12109579..12109603 (25 bp)
CGCCGCAGGCGGCATATCTTTTGAT
LOC_Os01g21640
OsAffx.11146.2.A1_at--945--6251Chr01:12109601..12109625 (25 bp)
GATGGGATGATCTGCGTCAGCAAAA
LOC_Os01g21640
OsAffx.11146.2.A1_at--982--3391Chr01:12109636..12109660 (25 bp)
CAGCATGGTTGTGATGTCCGGTTTC
LOC_Os01g21640
Target Sequence 
ATTGCTTACCCTATTGCAGGTCGGACAATCCATGCGGCGTGGTCGGCGCATGCCCGTACATTTCAGCAGCAGCCGCCGGC
GCCGGCGCCCTCGCCGCCCACCCTCTCCCGTTCGGCCACATGGCCTGTCCCGCCGCCTGCCACTCGGAGAGAACATGCGC
GGGCACTAATTGGTGGCCACGGCGACGCCGGATCCTCCACGGGAAGTGGCTGAAGCACATCTTGTGCTCCGCCGGCGGTC
GCAGCAAGGCCGAGCGCCGACGACATGTCTGCAGCACTTCGCCGGACGCACACAGAGGATGCTACTTCAGCCCCTCCCCG
TCGACGGGGTGGGCATCGGCGCATGGCGGCGGCGGCGGCGGCAGCTGGTACGCCTCCGGCTCCGGCGTGGGCAGAATGGT
GCAGGTGCCGGCCATCGATGCTGCCCCCGTTTGTATCGCCGCAGGCGGCATATCTTTTGATGGGATGATCTGCGTCAGCA
AAACCAACTTCACCAGCATGGTTGTGATGTCCGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11146.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis